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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47642 (48 seq.)
>W1710836232
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
640893
640805
-
Ser
TGA
[ENA]
¡û
>W1710914135
LNTC01000016
Campylobacterota
Aliarcobacter cryaerophilus [LNTC]
12807
12719
-
Ser
TGA
[ENA]
¡û
>W1711055311
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36352
36440
+
Ser
TGA
[ENA]
¡û
>W1711055337
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148174
148262
+
Ser
TGA
[ENA]
¡û
>W1711055356
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14608
14520
-
Ser
TGA
[ENA]
¡û
>W1711055391
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
46064
46152
+
Ser
TGA
[ENA]
¡û
>W1711055424
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
146919
147007
+
Ser
TGA
[ENA]
¡û
>W1711055452
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76890
76802
-
Ser
TGA
[ENA]
¡û
>WENV180283783
OBID01003072
[OBID] metagenome; sludge
100
188
+
Ser
TGA
[ENA]
¢þ
>WENV181732377
OGQD01029262
[OGQD] human gut metagenome; faeces
991
903
-
Ser
TGA
[ENA]
¢þ
>WENV170554712
CXWK01086886
[CXWK] wastewater metagenome; activated sludge
969
1057
+
Ser
TGA
[ENA]
¢þ
>C181199825
CP031367
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [CP031367]
275294
275206
-
Ser
TGA
-
¡û
>C191095050
CP032823
Campylobacterota
Aliarcobacter cryaerophilus ATCC 43158 [CP032823]
1701610
1701698
+
Ser
TGA
-
¡û
>C191095096
CP032825
Campylobacterota
Aliarcobacter cryaerophilus D2610 [CP032825]
1752987
1753075
+
Ser
TGA
-
¡û
>C191147099
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1720574
1720662
+
Ser
TGA
-
¡û
>C191149080
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1841005
1841093
+
Ser
TGA
-
¡û
>W1911424340
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
346863
346775
-
Ser
TGA
[ENA]
¡û
>W1911424373
NXGD01000003
Campylobacterota
Aliarcobacter cryaerophilus LMG 10229 [NXGD]
119266
119178
-
Ser
TGA
[ENA]
¡û
>W1911424418
NXGE01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 10210 [NXGE]
434671
434759
+
Ser
TGA
[ENA]
¡û
>W1911424566
NXGH01000024
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
5815
5903
+
Ser
TGA
[ENA]
¡û
>W1911424579
NXGI01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9065 [NXGI]
317357
317269
-
Ser
TGA
[ENA]
¡û
>W1911424634
NXGJ01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 9861 [NXGJ]
219243
219155
-
Ser
TGA
[ENA]
¡û
>W1911424665
NXGK01000006
Campylobacterota
Aliarcobacter cryaerophilus LMG 24291 [NXGK]
35956
36044
+
Ser
TGA
[ENA]
¡û
>W1911576056
PDJS01000001
Campylobacterota
Aliarcobacter trophiarum CECT 7650 [PDJS]
78133
78045
-
Ser
TGA
[ENA]
¡û
>W1911576526
PDKD01000001
Campylobacterota
Aliarcobacter trophiarum LMG 25534 [PDKD]
231061
231149
+
Ser
TGA
[ENA]
¡û
>W1610584463
LCSK01000003
Campylobacterota
Arcobacter porcinus [LCSK]
106950
107038
+
Ser
TGA
[ENA]
¡û
>W1610584500
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
264524
264436
-
Ser
TGA
[ENA]
¡û
>W1610584918
LCUH01000004
Campylobacterota
Aliarcobacter thereius [LCUH]
113647
113559
-
Ser
TGA
[ENA]
¡û
>W1610584953
LCUI01000002
Campylobacterota
Arcobacter porcinus [LCUI]
217173
217261
+
Ser
TGA
[ENA]
¡û
>W1610584998
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
375897
375985
+
Ser
TGA
[ENA]
¡û
>W1610585048
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117395
117307
-
Ser
TGA
[ENA]
¡û
>W1610586367
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
110679
110591
-
Ser
TGA
[ENA]
¡û
>W1610586405
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
131270
131182
-
Ser
TGA
[ENA]
¡û
>W1610699371
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
640893
640805
-
Ser
TGA
[ENA]
¡û
>W1610896357
LRUQ01000095
Campylobacterota
Aliarcobacter cryaerophilus [LRUQ]
36352
36440
+
Ser
TGA
[ENA]
¡û
>W1610896383
LRUR01000066
Campylobacterota
Aliarcobacter cryaerophilus [LRUR]
148174
148262
+
Ser
TGA
[ENA]
¡û
>W1610896402
LRUS01000081
Campylobacterota
Aliarcobacter cryaerophilus [LRUS]
14608
14520
-
Ser
TGA
[ENA]
¡û
>W1610896437
LRUT01000085
Campylobacterota
Aliarcobacter cryaerophilus [LRUT]
46064
46152
+
Ser
TGA
[ENA]
¡û
>W1610896470
LRUU01000083
Campylobacterota
Aliarcobacter cryaerophilus [LRUU]
146919
147007
+
Ser
TGA
[ENA]
¡û
>W1610896498
LRUV01000062
Campylobacterota
Aliarcobacter cryaerophilus [LRUV]
76890
76802
-
Ser
TGA
[ENA]
¡û
>W1710703680
LCSK01000003
Campylobacterota
Arcobacter porcinus [LCSK]
106950
107038
+
Ser
TGA
[ENA]
¡û
>W1710703717
LCSL01000004
Campylobacterota
Arcobacter porcinus [LCSL]
264524
264436
-
Ser
TGA
[ENA]
¡û
>W1710704109
LCUH01000004
Campylobacterota
Aliarcobacter thereius [LCUH]
113647
113559
-
Ser
TGA
[ENA]
¡û
>W1710704144
LCUI01000002
Campylobacterota
Arcobacter porcinus [LCUI]
217173
217261
+
Ser
TGA
[ENA]
¡û
>W1710704189
LCUJ01000002
Campylobacterota
Aliarcobacter thereius [LCUJ]
375897
375985
+
Ser
TGA
[ENA]
¡û
>W1710704239
LCUK01000002
Campylobacterota
Aliarcobacter thereius [LCUK]
117395
117307
-
Ser
TGA
[ENA]
¡û
>W1710705497
LDIR01000001
Campylobacterota
Arcobacter porcinus [LDIR]
110679
110591
-
Ser
TGA
[ENA]
¡û
>W1710705535
LDIS01000001
Campylobacterota
Aliarcobacter thereius [LDIS]
131270
131182
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK