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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47649 (30 seq.)
>W1711116088
LUAS01000111
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
37323
37410
+
Leu
TAA
[ENA]
¡û
>W1711185187
LWNE01000116
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
45443
45530
+
Leu
TAA
[ENA]
¡û
>W131159450
AQVB01000007
Betaproteobacteria
Oligella urethralis DSM 7531 [AQVB]
78497
78410
-
Leu
TAA
[ENA]
¡û
>W141194176
AYSV01000004
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
29792
29879
+
Leu
TAA
[ENA]
¡û
>W141200382
AYXT01000010
Betaproteobacteria
Advenella kashmirensis W13003 [AYXT]
172417
172504
+
Leu
TAA
[ENA]
¡û
>WENV170691268
LFRM01388969
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
9115
9028
-
Leu
TAA
[ENA]
¢þ
>WENV170721859
LSQX01206574
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
51005
51092
+
Leu
TAA
[ENA]
¢þ
>C181049093
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1312443
1312356
-
Leu
TAA
-
¡û
>C181049958
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1295622
1295535
-
Leu
TAA
-
¡û
>C181049995
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1378573
1378486
-
Leu
TAA
-
¡û
>C181050032
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1278749
1278662
-
Leu
TAA
-
¡û
>C181050114
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1332572
1332485
-
Leu
TAA
-
¡û
>C181152593
CP027417
Betaproteobacteria
Oligella urethralis FDAARGOS_329 [CP027417]
1948842
1948755
-
Leu
TAA
-
¡û
>C191208081
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1341029
1340942
-
Leu
TAA
-
¡û
>W141562676
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
129059
128972
-
Leu
TAA
[ENA]
¡û
>W1910225819
FMSW01000011
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
310584
310497
-
Leu
TAA
[ENA]
¡û
>W1910891674
NEXS01000003
Betaproteobacteria
Advenella sp. S44 [NEXS]
1129991
1130078
+
Leu
TAA
[ENA]
¡û
>W1911595520
PNGK01000002
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
37695
37782
+
Leu
TAA
[ENA]
¡û
>W1810701956
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
158474
158561
+
Leu
TAA
[ENA]
¡û
>C151004939
CP003915
Betaproteobacteria
Advenella mimigardefordensis DPN7 [CP003915]
2819521
2819434
-
Leu
TAA
[Ensembl]
¡û
>W1511350692
JRMO01000002
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
254036
253949
-
Leu
TAA
[ENA]
¡û
>W1511351549
JRNI01000058
Betaproteobacteria
Oligella urethralis DNF00040 [JRNI]
1896
1809
-
Leu
TAA
[ENA]
¡û
>C11122632
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
288731
288644
-
Leu
TAA
[Ensembl]
¡û
>W1511458946
JVJW01000088
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
10966
11053
+
Leu
TAA
[ENA]
¡û
>W1511461242
JVMH01000082
Betaproteobacteria
Oligella urethralis 303_AMIM [JVMH]
10966
11053
+
Leu
TAA
[ENA]
¡û
>W11171209
AFQG01000064
Betaproteobacteria
Advenella kashmirensis WT001 [AFQG]
9819
9732
-
Leu
TAA
[ENA]
¡û
>C121009944
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1371637
1371550
-
Leu
TAA
[Ensembl]
¡û
>C121014495
CP003555
Betaproteobacteria
Advenella kashmirensis WT001 [CP003555]
1619244
1619331
+
Leu
TAA
[Ensembl]
¡û
>W1610606586
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
9115
9028
-
Leu
TAA
[ENA]
¡û
>W1710727873
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
9115
9028
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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