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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4768 (35 seq.)
>W131051973
AMYG01000024
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
8496
8403
-
Ser
GGA
[ENA]
¡û
>W131167541
ARDJ01000001
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
133901
133994
+
Ser
GGA
[ENA]
¡û
>C025820
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
46129
46222
+
Ser
GGA
[Ensembl]
¡û
>w018993
AATV01000069
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
2240
2335
+
Ser
GGA
[ENA]
¡û
>w010162
AAKQ01000001
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
234991
234896
-
Ser
GGA
[ENA]
¡û
>W141092574
AVAF01000010
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
42580
42673
+
Ser
GGA
[ENA]
¡û
>WENV181226262
OFDK01000420
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
770
863
+
Ser
GGA
[ENA]
¢þ
>W141153134
AXDC01000021
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
9526
9433
-
Ser
GGA
[ENA]
¡û
>C08010931
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
35439
35532
+
Ser
GGA
[Ensembl]
¡û
>C08011060
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
2276106
2276016
-
Ser
GGA
[Ensembl]
¡û
>WENV170675651
LDZP01000179
[LDZP] terrestrial metagenome; oil reservoir sample I1
29784
29877
+
Ser
GGA
[ENA]
¢þ
>WENV170676259
LDZR01001893
[LDZR] terrestrial metagenome; oil reservoir sample K2
556
463
-
Ser
GGA
[ENA]
¢þ
>C191108095
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
447485
447578
+
Ser
GGA
-
¡û
>W09112153
ABXP01000175
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
2682
2775
+
Ser
GGA
[ENA]
¡û
>W09133520
ACPF01000008
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
3622
3529
-
Ser
GGA
[ENA]
¡û
>W09134151
ACQZ01000050
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
1849
1942
+
Ser
GGA
[ENA]
¡û
>W09135856
ACXP01000013
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
8485
8392
-
Ser
GGA
[ENA]
¡û
>C151045283
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
45079
45172
+
Ser
GGA
[Ensembl]
¡û
>W10105930
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
8583
8490
-
Ser
GGA
[ENA]
¡û
>W10120513
ADXD01000075
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8925
8832
-
Ser
GGA
[ENA]
¡û
>W11108253
ACXY01000009
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
8583
8490
-
Ser
GGA
[ENA]
¡û
>W1511275110
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
399360
399267
-
Ser
GGA
[ENA]
¡û
>C11122487
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
2263250
2263157
-
Ser
GGA
[Ensembl]
¡û
>C11122689
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
35343
35436
+
Ser
GGA
[Ensembl]
¡û
>C11123220
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
57444
57537
+
Ser
GGA
[Ensembl]
¡û
>W11127122
ADXD01000075
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
8925
8832
-
Ser
GGA
[ENA]
¡û
>W11152649
AEYS01000010
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
20867
20774
-
Ser
GGA
[ENA]
¡û
>W121068094
AJUD01000008
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
324237
324330
+
Ser
GGA
[ENA]
¡û
>W1610612283
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
29784
29877
+
Ser
GGA
[ENA]
¡û
>W1610612661
LGEY01000085
Bacillota
Caldanaerobacter subterraneus [LGEY]
556
463
-
Ser
GGA
[ENA]
¡û
>W1710515332
FNBS01000059
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
7149
7242
+
Ser
GGA
[ENA]
¡û
>W1710560380
FONI01000029
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
8789
8696
-
Ser
GGA
[ENA]
¡û
>W1710583318
FQUR01000013
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
84989
85082
+
Ser
GGA
[ENA]
¡û
>W1710733789
LGEO01000016
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
29784
29877
+
Ser
GGA
[ENA]
¡û
>W1710733982
LGEY01000085
Bacillota
Caldanaerobacter subterraneus [LGEY]
556
463
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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