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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477082 (55 seq.)
>W131046010
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
108401
108326
-
Lys
CTT
[ENA]
¡û
>W131046011
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
108254
108179
-
Lys
CTT
[ENA]
¡û
>W131046052
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
117370
117295
-
Lys
CTT
[ENA]
¡û
>W131046053
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
117223
117148
-
Lys
CTT
[ENA]
¡û
>W131062284
ANJR01000020
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
23874
23949
+
Lys
CTT
[ENA]
¡û
>W131220901
ATZZ01000008
Betaproteobacteria
Chitinimonas koreensis DSM 17726 [ATZZ]
60499
60424
-
Lys
CTT
[ENA]
¡û
>W1711430719
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
600016
599941
-
Lys
CTT
[ENA]
¡û
>W1711430720
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
599866
599791
-
Lys
CTT
[ENA]
¡û
>W1711765145
MUXB01000183
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
8510
8435
-
Lys
CTT
[ENA]
¡û
>W1711765146
MUXB01000183
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
8363
8288
-
Lys
CTT
[ENA]
¡û
>W1712110315
NJGV01000004
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
210565
210490
-
Lys
CTT
[ENA]
¡û
>C171021243
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2004042
2003967
-
Lys
CTT
-
¡û
>C171021244
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2003892
2003817
-
Lys
CTT
-
¡û
>W141003846
AEEC02000053
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
20459
20534
+
Lys
CTT
[ENA]
¡û
>W141003847
AEEC02000053
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
20606
20681
+
Lys
CTT
[ENA]
¡û
>W141223413
BADF01000770
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
241
166
-
Lys
CTT
[ENA]
¡û
>W141223516
BADI01001181
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
2357
2282
-
Lys
CTT
[ENA]
¡û
>WENV183727327
PJTO01028630
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
520
445
-
Lys
CTT
[ENA]
¢þ
>WENV183727328
PJTO01028630
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
373
298
-
Lys
CTT
[ENA]
¢þ
>WENV183727844
PJTP01001145
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2771
2696
-
Lys
CTT
[ENA]
¢þ
>WENV183727998
PJTP01014040
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
670
745
+
Lys
CTT
[ENA]
¢þ
>WENV183730169
PJTR01001950
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
782
707
-
Lys
CTT
[ENA]
¢þ
>WENV183735087
PJUA01000830
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
7322
7397
+
Lys
CTT
[ENA]
¢þ
>WENV183735798
PJUB01002787
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
1874
1949
+
Lys
CTT
[ENA]
¢þ
>WENV183736655
PJUC01035507
[PJUC] soil metagenome; Soil enriched on filter paper
268
343
+
Lys
CTT
[ENA]
¢þ
>WENV183738064
PJUD01074665
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
521
596
+
Lys
CTT
[ENA]
¢þ
>WENV183738065
PJUD01074665
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
668
743
+
Lys
CTT
[ENA]
¢þ
>WENV183739416
PJUE01014777
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
84
159
+
Lys
CTT
[ENA]
¢þ
>WENV183743721
PJUJ01030277
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
274
349
+
Lys
CTT
[ENA]
¢þ
>WENV183744460
PJUK01034329
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
211
286
+
Lys
CTT
[ENA]
¢þ
>ENV08001474
ABND01004155
fish metagenome; viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease
2
77
+
Lys
CTT
[ENA]
¡û
>WENV170201355
CEPQ01014886
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
118
-
Lys
CTT
[ENA]
¢þ
>C191029374
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
1956551
1956476
-
Lys
CTT
-
¡û
>C191029375
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
1956405
1956330
-
Lys
CTT
-
¡û
>C191124271
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
1882758
1882683
-
Lys
CTT
-
¡û
>C191156661
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2030354
2030279
-
Lys
CTT
-
¡û
>C191156662
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2030206
2030131
-
Lys
CTT
-
¡û
>W1910577871
JUGD01000026
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
109893
109818
-
Lys
CTT
[ENA]
¡û
>W1910577872
JUGD01000026
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
109746
109671
-
Lys
CTT
[ENA]
¡û
>W1910578284
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
108400
108325
-
Lys
CTT
[ENA]
¡û
>W1910578285
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
108253
108178
-
Lys
CTT
[ENA]
¡û
>SRA1001557
SRR001071.16357
Tilapia Farm, viral fraction from slime layer of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish showed no sign of disease (SRP000159)
2
77
+
Lys
CTT
[SRA]
>W1810194063
PKOI01000021
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
71129
71204
+
Lys
CTT
[ENA]
¡û
>C151087606
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2023725
2023650
-
Lys
CTT
[Ensembl]
¡û
>C151087607
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2023575
2023500
-
Lys
CTT
[Ensembl]
¡û
>C10107839
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2023965
2023890
-
Lys
CTT
[Ensembl]
¡û
>C10107840
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2023815
2023740
-
Lys
CTT
[Ensembl]
¡û
>C161060479
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
1930563
1930488
-
Lys
CTT
[Ensembl]
¡û
>C161060480
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
1930417
1930342
-
Lys
CTT
[Ensembl]
¡û
>W1610071840
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
78061
78136
+
Lys
CTT
[ENA]
¡û
>W1610071841
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
78207
78282
+
Lys
CTT
[ENA]
¡û
>W121068716
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
519810
519735
-
Lys
CTT
[ENA]
¡û
>W121068717
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
519663
519588
-
Lys
CTT
[ENA]
¡û
>W1710069042
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
78061
78136
+
Lys
CTT
[ENA]
¡û
>W1710069043
BCUJ01000009
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
78207
78282
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK