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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477214 (64 seq.)
>W1711338199
MBSV01000087
Bacillota
Clostridium sp. W14A [MBSV]
1926
2001
+
Ala
TGC
[ENA]
¡û
>W1712039078
NFJK01000007
Bacillota
Anaeromassilibacillus sp. An250 [NFJK]
159830
159905
+
Ala
TGC
[ENA]
¡û
>W1712039625
NFJU01000148
Bacillota
Anaeromassilibacillus sp. An200 [NFJU]
359
284
-
Ala
TGC
[ENA]
¡û
>C171111420
CP020705
Bacillota
Ruminococcaceae bacterium CPB6 [CP020705]
315865
315940
+
Ala
TGC
-
¡û
>C171111429
CP020705
Bacillota
Ruminococcaceae bacterium CPB6 [CP020705]
655539
655614
+
Ala
TGC
-
¡û
>C171111454
CP020705
Bacillota
Ruminococcaceae bacterium CPB6 [CP020705]
2051536
2051461
-
Ala
TGC
-
¡û
>WENV180224109
OBBI01058640
[OBBI] human gut metagenome; human gut
135
60
-
Ala
TGC
[ENA]
¢þ
>WENV180349576
OBLO01064830
[OBLO] metagenome; feces
624
549
-
Ala
TGC
[ENA]
¢þ
>WENV180420435
OBVO01003417
[OBVO] human gut metagenome; faeces
208
283
+
Ala
TGC
[ENA]
¢þ
>WENV180540345
OCHQ01025324
[OCHQ] human gut metagenome; human gut
413
338
-
Ala
TGC
[ENA]
¢þ
>WENV180543188
OCHT01081794
[OCHT] human gut metagenome; human gut
56
131
+
Ala
TGC
[ENA]
¢þ
>WENV180543615
OCHT01218860
[OCHT] human gut metagenome; human gut
56
131
+
Ala
TGC
[ENA]
¢þ
>WENV180626247
OCQL01270750
[OCQL] human gut metagenome; human gut
25
100
+
Ala
TGC
[ENA]
¢þ
>WENV180629795
OCQP01218161
[OCQP] human gut metagenome; human gut
87
162
+
Ala
TGC
[ENA]
¢þ
>WENV180754164
ODHT01132824
[ODHT] human metagenome; G_DNA_Stool
126
51
-
Ala
TGC
[ENA]
¢þ
>WENV181195108
OEQS01002391
[OEQS] metagenome; Caecal content
263
338
+
Ala
TGC
[ENA]
¢þ
>WENV181196110
OEQW01001396
[OEQW] metagenome; Caecal content
263
338
+
Ala
TGC
[ENA]
¢þ
>WENV181202275
OERR01000374
[OERR] metagenome; Caecal content
9881
9806
-
Ala
TGC
[ENA]
¢þ
>WENV181203562
OERW01001722
[OERW] metagenome; Caecal content
2416
2341
-
Ala
TGC
[ENA]
¢þ
>WENV181343923
OFMJ01023999
[OFMJ] human gut metagenome; human gut
890
815
-
Ala
TGC
[ENA]
¢þ
>WENV181364325
OFOU01066382
[OFOU] human gut metagenome; human gut
318
393
+
Ala
TGC
[ENA]
¢þ
>WENV181510258
OGGQ01058115
[OGGQ] metagenome; Human gut stool
750
675
-
Ala
TGC
[ENA]
¢þ
>WENV181702366
OGPH01062796
[OGPH] human gut metagenome; faeces
300
375
+
Ala
TGC
[ENA]
¢þ
>WENV181873292
OGWZ01061195
[OGWZ] human gut metagenome; faeces
277
202
-
Ala
TGC
[ENA]
¢þ
>WENV181884238
OGXI01073201
[OGXI] human gut metagenome; faeces
307
382
+
Ala
TGC
[ENA]
¢þ
>WENV181897190
OGXS01051059
[OGXS] human gut metagenome; faeces
304
379
+
Ala
TGC
[ENA]
¢þ
>WENV181905104
OGXX01090429
[OGXX] human gut metagenome; faeces
670
595
-
Ala
TGC
[ENA]
¢þ
>WENV181920222
OGYI01048794
[OGYI] human gut metagenome; faeces
277
202
-
Ala
TGC
[ENA]
¢þ
>WENV181962303
OGZO01123889
[OGZO] human gut metagenome; faeces
235
310
+
Ala
TGC
[ENA]
¢þ
>WENV182002027
OHAY01050033
[OHAY] human gut metagenome; faeces
260
335
+
Ala
TGC
[ENA]
¢þ
>WENV182136132
OHKJ01046009
[OHKJ] human gut metagenome; feces
312
237
-
Ala
TGC
[ENA]
¢þ
>WENV182152980
OHLM01008439
[OHLM] human gut metagenome; feces
227
302
+
Ala
TGC
[ENA]
¢þ
>WENV182169628
OHMU01010495
[OHMU] human gut metagenome; feces
203
278
+
Ala
TGC
[ENA]
¢þ
>WENV182208494
OHPX01017633
[OHPX] human gut metagenome; feces
883
808
-
Ala
TGC
[ENA]
¢þ
>WENV182231806
OHRM01039033
[OHRM] human gut metagenome; feces
694
619
-
Ala
TGC
[ENA]
¢þ
>WENV182249281
OHSP01044806
[OHSP] human gut metagenome; feces
256
331
+
Ala
TGC
[ENA]
¢þ
>WENV182258973
OHTH01002083
[OHTH] human gut metagenome; feces
5848
5773
-
Ala
TGC
[ENA]
¢þ
>WENV182391744
OIEF01045118
[OIEF] human gut metagenome; human gut
653
578
-
Ala
TGC
[ENA]
¢þ
>WENV182881880
OKSA01052509
[OKSA] human gut metagenome; faeces
670
595
-
Ala
TGC
[ENA]
¢þ
>WENV183064435
OLIH01007001
[OLIH] metagenome; faeces
1239
1164
-
Ala
TGC
[ENA]
¢þ
>WENV183111561
OLNO01029827
[OLNO] human gut metagenome; faeces
1153
1078
-
Ala
TGC
[ENA]
¢þ
>WENV183113701
OLNP01029424
[OLNP] human gut metagenome; faeces
306
381
+
Ala
TGC
[ENA]
¢þ
>WENV183216858
OLQH01013800
[OLQH] human gut metagenome; faeces
1182
1107
-
Ala
TGC
[ENA]
¢þ
>WENV183244155
OLRD01006948
[OLRD] human gut metagenome; faeces
2027
1952
-
Ala
TGC
[ENA]
¢þ
>WENV183253427
OLRI01083840
[OLRI] human gut metagenome; faeces
269
194
-
Ala
TGC
[ENA]
¢þ
>WENV183602010
OODJ01011846
[OODJ] human gut metagenome; human gut
247
322
+
Ala
TGC
[ENA]
¢þ
>WENV183763779
PPYE01311081
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
302
227
-
Ala
TGC
[ENA]
¢þ
>WENV183778431
PPYF01122764
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1537
1462
-
Ala
TGC
[ENA]
¢þ
>WENV170637606
JFBN01345558
[JFBN] chicken gut metagenome; ceca of Broiler chicken
609
534
-
Ala
TGC
[ENA]
¢þ
>WENV170638069
JFBN01412039
[JFBN] chicken gut metagenome; ceca of Broiler chicken
147
222
+
Ala
TGC
[ENA]
¢þ
>WENV170638877
JFBN01582635
[JFBN] chicken gut metagenome; ceca of Broiler chicken
39
114
+
Ala
TGC
[ENA]
¢þ
>WENV170670037
LAHS01019243
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
905
830
-
Ala
TGC
[ENA]
¢þ
>C191138272
CP035283
Bacillota
Caproiciproducens sp. NJN-50 [CP035283]
428942
429017
+
Ala
TGC
-
¡û
>C191138291
CP035283
Bacillota
Caproiciproducens sp. NJN-50 [CP035283]
3287814
3287739
-
Ala
TGC
-
¡û
>C191138305
CP035283
Bacillota
Caproiciproducens sp. NJN-50 [CP035283]
2147639
2147564
-
Ala
TGC
-
¡û
>W1910440218
FWDV01000002
Bacillota
Anaeromassilibacillus sp. Marseille-P3371 [FWDV]
1779
1854
+
Ala
TGC
[ENA]
¡û
>W1910440258
FWDV01000069
Bacillota
Anaeromassilibacillus sp. Marseille-P3371 [FWDV]
93814
93739
-
Ala
TGC
[ENA]
¡û
>W1910499940
FXYJ02000016
Bacillota
Ruminococcaceae bacterium HV4-5-B5C [FXYJ]
3298
3223
-
Ala
TGC
[ENA]
¡û
>W1810697982
QLYR01000021
Bacillota
Hydrogeniiclostridium mannosilyticum ASD2818 [QLYR]
1591
1516
-
Ala
TGC
[ENA]
¡û
>W1510667901
CWIP01000014
Bacillota
Anaeromassilibacillus senegalensis mt9 [CWIP]
93
18
-
Ala
TGC
[ENA]
¡û
>W1610058690
BCAA01000057
Bacillota
Clostridia bacterium UC5.1-1E11 [BCAA]
2001
2076
+
Ala
TGC
[ENA]
¡û
>W1611067127
MBSV01000087
Bacillota
Clostridium sp. W14A [MBSV]
1926
2001
+
Ala
TGC
[ENA]
¡û
>WENV082477
BAAV01011894
Gut microbiome of Human (healthy human sample F1-T, Adult, Female)
513
590
+
Ala
TGC
[ENA]
>W1710055449
BCAA01000057
Bacillota
Clostridia bacterium UC5.1-1E11 [BCAA]
2001
2076
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK