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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.477664 (47 seq.)
>W1710879947
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
553917
553990
+
Glu
TTC
[ENA]
¡û
>W1710880979
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225240
225167
-
Glu
TTC
[ENA]
¡û
>W1710881046
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521883
521810
-
Glu
TTC
[ENA]
¡û
>W1711021416
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
142275
142348
+
Glu
TTC
[ENA]
¡û
>C171022244
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
249880
249807
-
Glu
TTC
-
¡û
>W131161617
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
2472546
2472473
-
Glu
TTC
[ENA]
¡û
>W131227559
AUFG01000007
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
32882
32955
+
Glu
TTC
[ENA]
¡û
>W141039298
ALWX01000039
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
55850
55923
+
Glu
TTC
[ENA]
¡û
>W141242988
CAJB01000057
Actinomycetota
Tetrasphaera japonica T1-X7 [CAJB]
21588
21661
+
Glu
TTC
[ENA]
¡û
>WENV170010428
APMI01016982
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1329
1402
+
Glu
TTC
[ENA]
¢þ
>WENV170011294
APMI01054636
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1687
1614
-
Glu
TTC
[ENA]
¢þ
>WENV170011297
APMI01054637
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1633
1560
-
Glu
TTC
[ENA]
¢þ
>C181200521
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
2593378
2593451
+
Glu
TTC
-
¡û
>C191147711
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
2924425
2924498
+
Glu
TTC
-
¡û
>W1911533124
OKQN01000007
Actinomycetota
Janibacter massiliensis Marseille-P4121 [OKQN]
153603
153530
-
Glu
TTC
[ENA]
¡û
>W1911584644
PIPF01000010
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
271795
271868
+
Glu
TTC
[ENA]
¡û
>W1810364575
PVTI01000029
Actinomycetota
Knoellia remsis ATCC BAA-1496 [PVTI]
31357
31284
-
Glu
TTC
[ENA]
¡û
>W1810701932
QMFW01000176
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
315
242
-
Glu
TTC
[ENA]
¡û
>C151077145
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
1408556
1408483
-
Glu
TTC
-
¡û
>C151090440
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
353966
354039
+
Glu
TTC
-
¡û
>W1510071701
CDGT01000021
Actinomycetota
Mobilicoccus massiliensis SIT2 [CDGT]
220479
220406
-
Glu
TTC
[ENA]
¡û
>W1511568108
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
3149978
3150051
+
Glu
TTC
[ENA]
¡û
>W11155913
AFAQ01000438
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
563
636
+
Glu
TTC
[ENA]
¡û
>W1610051266
BBGR01001209
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
359
286
-
Glu
TTC
[ENA]
¡û
>W1610062560
BCNQ01000003
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
69319
69392
+
Glu
TTC
[ENA]
¡û
>W1610069623
BCSQ01000024
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14457
14530
+
Glu
TTC
[ENA]
¡û
>W1610069681
BCSR01000027
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
24220
24293
+
Glu
TTC
[ENA]
¡û
>W1610069711
BCSS01000010
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
36913
36840
-
Glu
TTC
[ENA]
¡û
>W1610072304
BCUV01000007
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
622482
622555
+
Glu
TTC
[ENA]
¡û
>W1610078175
BDAR01000013
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
12232
12305
+
Glu
TTC
[ENA]
¡û
>W121124411
BAFE01000022
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
7412
7339
-
Glu
TTC
[ENA]
¡û
>W121126447
BAGZ01000008
Actinomycetota
Austwickia chelonae NBRC 105200 [BAGZ]
18182
18109
-
Glu
TTC
[ENA]
¡û
>W121126637
BAHD01000028
Actinomycetota
Kineosphaera limosa NBRC 100340 [BAHD]
39907
39832
-
Glu
TTC
[ENA]
¡û
>W1610742293
LMRZ01000006
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
553917
553990
+
Glu
TTC
[ENA]
¡û
>W1610743325
LMSS01000003
Actinomycetota
Phycicoccus sp. Soil802 [LMSS]
225240
225167
-
Glu
TTC
[ENA]
¡û
>W1610743392
LMST01000001
Actinomycetota
Phycicoccus sp. Soil803 [LMST]
521883
521810
-
Glu
TTC
[ENA]
¡û
>W1610869704
LQZG01000001
Actinomycetota
Janibacter melonis [LQZG]
142275
142348
+
Glu
TTC
[ENA]
¡û
>W1710047665
BBGR01001209
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BBGR]
359
286
-
Glu
TTC
[ENA]
¡û
>W1710060036
BCNQ01000003
Actinomycetota
Piscicoccus intestinalis NBRC 104926 [BCNQ]
69319
69392
+
Glu
TTC
[ENA]
¡û
>W1710066996
BCSQ01000024
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
14457
14530
+
Glu
TTC
[ENA]
¡û
>W1710067054
BCSR01000027
Actinomycetota
Janibacter corallicola NBRC 107790 [BCSR]
24220
24293
+
Glu
TTC
[ENA]
¡û
>W1710067084
BCSS01000010
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
36913
36840
-
Glu
TTC
[ENA]
¡û
>W1710069506
BCUV01000007
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
622482
622555
+
Glu
TTC
[ENA]
¡û
>W1710076734
BDAR01000013
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
12232
12305
+
Glu
TTC
[ENA]
¡û
>W1710552756
FOHB01000004
Actinomycetota
Pedococcus cremeus [FOHB]
147558
147631
+
Glu
TTC
[ENA]
¡û
>W1710555163
FOJD01000001
Actinomycetota
Austwickia chelonae [FOJD]
304919
304846
-
Glu
TTC
[ENA]
¡û
>W1710606099
FWXN01000008
Actinomycetota
Janibacter indicus [FWXN]
160922
160995
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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