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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47847 (128 seq.)
>W131010445
AHYM01000013
Bacillota
Lactococcus garvieae ATCC 49156 [AHYM]
101034
100945
-
Leu
TAA
[ENA]
¡û
>W131037518
AMFD01000013
Bacillota
Lactococcus garvieae I113 [AMFD]
93378
93289
-
Leu
TAA
[ENA]
¡û
>W131037574
AMFE01000065
Bacillota
Lactococcus garvieae Tac2 [AMFE]
9241
9154
-
Leu
TAA
[ENA]
¡û
>W131044519
AMQS01000046
Bacillota
Lactococcus garvieae DCC43 [AMQS]
8910
8821
-
Leu
TAA
[ENA]
¡û
>W1710989122
LPVR01000002
Bacillota
Streptococcus equinus [LPVR]
8292
8207
-
Leu
TAA
[ENA]
¡û
>W1710989131
LPVR01000002
Bacillota
Streptococcus equinus [LPVR]
2460
2375
-
Leu
TAA
[ENA]
¡û
>W1710989147
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
798382
798297
-
Leu
TAA
[ENA]
¡û
>W1710989157
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
792550
792465
-
Leu
TAA
[ENA]
¡û
>W1711006254
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1711006424
LQOI01000158
Bacillota
Streptococcus lutetiensis [LQOI]
263
178
-
Leu
TAA
[ENA]
¡û
>W1711010382
LQRG01000019
Bacillota
Streptococcus sp. DD12 [LQRG]
445
530
+
Leu
TAA
[ENA]
¡û
>W1711228325
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W131202421
ASWT01000002
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
1073
1162
+
Leu
TAA
[ENA]
¡û
>W1711744874
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
223928
223839
-
Leu
TAA
[ENA]
¡û
>W1711942794
NBBK01000022
Bacillota
Lactococcus garvieae [NBBK]
8927
8838
-
Leu
TAA
[ENA]
¡û
>C171084819
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
21820
21905
+
Leu
TAA
-
¡û
>C171084828
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
27544
27629
+
Leu
TAA
-
¡û
>WENV180116364
OAQU01000097
[OAQU] human gut metagenome; ENVO:feces
29412
29327
-
Leu
TAA
[ENA]
¢þ
>WENV180116557
OAQV01003001
[OAQV] human gut metagenome; ENVO:feces
148
233
+
Leu
TAA
[ENA]
¢þ
>WENV180117457
OARK01003899
[OARK] human gut metagenome; ENVO:feces
786
701
-
Leu
TAA
[ENA]
¢þ
>WENV180401622
OBRM01001091
[OBRM] human gut metagenome; ENVO:feces
506
421
-
Leu
TAA
[ENA]
¢þ
>WENV180408209
OBUS01000269
[OBUS] human gut metagenome; faeces
49422
49337
-
Leu
TAA
[ENA]
¢þ
>WENV180418791
OBVL01000098
[OBVL] human gut metagenome; faeces
29885
29800
-
Leu
TAA
[ENA]
¢þ
>WENV180482799
OBZG01011272
[OBZG] human gut metagenome; faeces
151
236
+
Leu
TAA
[ENA]
¢þ
>WENV180597143
OCPK01003709
[OCPK] human gut metagenome; ENVO:feces
1055
1140
+
Leu
TAA
[ENA]
¢þ
>W141091759
AUZH01000004
Bacillota
Streptococcus equinus JB1 [AUZH]
263
178
-
Leu
TAA
[ENA]
¡û
>W141096203
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
45206
45117
-
Leu
TAA
[ENA]
¡û
>WENV181577747
OGJX01016452
[OGJX] metagenome; Human gut stool
580
665
+
Leu
TAA
[ENA]
¢þ
>WENV181795185
OGRS01032114
[OGRS] human gut metagenome; faeces
335
250
-
Leu
TAA
[ENA]
¢þ
>WENV181887421
OGXL01004899
[OGXL] human gut metagenome; faeces
7288
7373
+
Leu
TAA
[ENA]
¢þ
>WENV181890438
OGXN01030545
[OGXN] human gut metagenome; faeces
149
234
+
Leu
TAA
[ENA]
¢þ
>WENV181907051
OGXZ01022229
[OGXZ] human gut metagenome; faeces
1163
1248
+
Leu
TAA
[ENA]
¢þ
>WENV181965182
OGZS01002529
[OGZS] human gut metagenome; faeces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182185656
OHOG01000425
[OHOG] human gut metagenome; feces
2126
2041
-
Leu
TAA
[ENA]
¢þ
>WENV182458455
OINI01004511
[OINI] human gut metagenome; human gut
887
802
-
Leu
TAA
[ENA]
¢þ
>WENV182458877
OINJ01006317
[OINJ] human gut metagenome; human gut
751
666
-
Leu
TAA
[ENA]
¢þ
>WENV182465994
OIOO01004022
[OIOO] human gut metagenome; human gut
443
528
+
Leu
TAA
[ENA]
¢þ
>WENV182468172
OIOX01007388
[OIOX] human gut metagenome; human gut
580
665
+
Leu
TAA
[ENA]
¢þ
>WENV182494123
OISX01000768
[OISX] human gut metagenome; human gut
102
17
-
Leu
TAA
[ENA]
¢þ
>WENV182518525
OIWP01001043
[OIWP] human gut metagenome; faeces
36472
36385
-
Leu
TAA
[ENA]
¢þ
>WENV182811284
OJXK01000061
[OJXK] human gut metagenome; human gut
148
233
+
Leu
TAA
[ENA]
¢þ
>WENV182856247
OKNJ01000028
[OKNJ] human gut metagenome; human gut
28985
28900
-
Leu
TAA
[ENA]
¢þ
>WENV182965758
OKWT01000135
[OKWT] human gut metagenome; stool
602
687
+
Leu
TAA
[ENA]
¢þ
>WENV182997282
OLBP01000714
[OLBP] human gut metagenome; human gut
3896
3981
+
Leu
TAA
[ENA]
¢þ
>WENV183256147
OLRK01007109
[OLRK] human gut metagenome; faeces
3951
4036
+
Leu
TAA
[ENA]
¢þ
>WENV183333778
OLWE01010482
[OLWE] human gut metagenome; feces
1065
1150
+
Leu
TAA
[ENA]
¢þ
>WENV183346491
OLWS01016376
[OLWS] human gut metagenome; feces
228
143
-
Leu
TAA
[ENA]
¢þ
>WENV183511399
OMJG01000186
[OMJG] food metagenome; Cotija cheese
92
180
+
Leu
TAA
[ENA]
¢þ
>WENV183548355
OOAW01007796
[OOAW] human gut metagenome; human gut
1031
1116
+
Leu
TAA
[ENA]
¢þ
>WENV183603070
OODK01000608
[OODK] human gut metagenome; human gut
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV183610963
OODS01021777
[OODS] human gut metagenome; human gut
1060
1145
+
Leu
TAA
[ENA]
¢þ
>WENV183785871
PPYF01298455
[PPYF] human gut metagenome; stool from patient with Crohn's disease
525
610
+
Leu
TAA
[ENA]
¢þ
>WENV170547772
CXTS01000594
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
197
108
-
Leu
TAA
[ENA]
¢þ
>WENV170548326
CXUD01001401
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
303
214
-
Leu
TAA
[ENA]
¢þ
>WENV170549760
CXVH01002489
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
198
109
-
Leu
TAA
[ENA]
¢þ
>WENV170549796
CXVI01001225
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
268
181
-
Leu
TAA
[ENA]
¢þ
>C181001709
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1355926
1356014
+
Leu
TAA
-
¡û
>C181180407
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
24694
24781
+
Leu
TAA
-
¡û
>C181180450
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
1807981
1807894
-
Leu
TAA
-
¡û
>C181209595
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
24678
24765
+
Leu
TAA
-
¡û
>C181209637
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
1813077
1812990
-
Leu
TAA
-
¡û
>C181209796
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
24706
24793
+
Leu
TAA
-
¡û
>C181209839
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
1808052
1807965
-
Leu
TAA
-
¡û
>C181211566
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
21909
21994
+
Leu
TAA
-
¡û
>C181211575
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
27633
27718
+
Leu
TAA
-
¡û
>C181214945
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
23039
23124
+
Leu
TAA
-
¡û
>C181214955
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
28853
28938
+
Leu
TAA
-
¡û
>C181225182
LT906454
Bacillota
Streptococcus acidominimus NCTC11291 [LT906454]
26379
26464
+
Leu
TAA
-
¡û
>C191044539
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1821070
1820982
-
Leu
TAA
-
¡û
>C191166361
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
30126
30211
+
Leu
TAA
-
¡û
>C191166371
CP039457
Bacillota
Streptococcus pasteurianus WUSP067 [CP039457]
35940
36025
+
Leu
TAA
-
¡û
>C191199801
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
624832
624917
+
Leu
TAA
-
¡û
>C191223061
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
1755631
1755546
-
Leu
TAA
-
¡û
>C191223071
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
1749799
1749714
-
Leu
TAA
-
¡û
>W1910583202
JXJU01000004
Bacillota
Lactococcus fujiensis JCM 16395 [JXJU]
195010
194925
-
Leu
TAA
[ENA]
¡û
>W1910641577
LTDA01000020
Bacillota
Lactococcus garvieae KS1546 [LTDA]
81
169
+
Leu
TAA
[ENA]
¡û
>W1911162466
NPOU01000001
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
1776649
1776562
-
Leu
TAA
[ENA]
¡û
>W1911162496
NPOU01000003
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
48365
48278
-
Leu
TAA
[ENA]
¡û
>W1911539652
ONUZ01000035
Bacillota
Streptococcus equinus [ONUZ]
12002
11917
-
Leu
TAA
[ENA]
¡û
>W1810010482
BFFO01000003
Bacillota
Lactococcus termiticola NtB2 [BFFO]
219185
219100
-
Leu
TAA
[ENA]
¡û
>W1810829828
QSLI01000016
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
30391
30306
-
Leu
TAA
[ENA]
¡û
>W1810907553
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
222901
222813
-
Leu
TAA
[ENA]
¡û
>W1510060211
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>W1510060328
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1320078
1320167
+
Leu
TAA
[ENA]
¡û
>W1510069691
CDEY01000056
Bacillota
Streptococcus pasteurianus HC-2909-2 [CDEY]
189
274
+
Leu
TAA
[ENA]
¡û
>C11112709
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1805274
1805185
-
Leu
TAA
[Ensembl]
¡û
>C11112769
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1819103
1819014
-
Leu
TAA
[Ensembl]
¡û
>W1511228283
JNLO01000001
Bacillota
Streptococcus equinus AG46 [JNLO]
1511331
1511246
-
Leu
TAA
[ENA]
¡û
>W1511228293
JNLO01000001
Bacillota
Streptococcus equinus AG46 [JNLO]
1505502
1505417
-
Leu
TAA
[ENA]
¡û
>W1511314665
JPUJ01000002
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
181775
181686
-
Leu
TAA
[ENA]
¡û
>W1511447382
JUYN01000003
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
257
172
-
Leu
TAA
[ENA]
¡û
>W1511530573
JYKU01000001
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
648
733
+
Leu
TAA
[ENA]
¡û
>W1511530590
JYKU01000002
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
648
733
+
Leu
TAA
[ENA]
¡û
>W11157443
AFCC01000007
Bacillota
Lactococcus garvieae 21881 [AFCC]
37
126
+
Leu
TAA
[ENA]
¡û
>W11157491
AFCD01000005
Bacillota
Lactococcus garvieae 8831 [AFCD]
36
125
+
Leu
TAA
[ENA]
¡û
>W11162742
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4787
4876
+
Leu
TAA
[ENA]
¡û
>W11179218
AGGE01000345
Bacillota
Streptococcus sobrinus TCI-28 [AGGE]
254
167
-
Leu
TAA
[ENA]
¡û
>W11179391
AGGK01000243
Bacillota
Streptococcus sobrinus TCI-77 [AGGK]
256
169
-
Leu
TAA
[ENA]
¡û
>W11179514
AGGO01000341
Bacillota
Streptococcus sobrinus TCI-98 [AGGO]
255
168
-
Leu
TAA
[ENA]
¡û
>W11179976
AGHE01000428
Bacillota
Streptococcus sobrinus TCI-374 [AGHE]
444
357
-
Leu
TAA
[ENA]
¡û
>W11180092
AGHI01000182
Bacillota
Streptococcus sobrinus TCI-384 [AGHI]
255
168
-
Leu
TAA
[ENA]
¡û
>W11180122
AGHJ01000392
Bacillota
Streptococcus sobrinus TCI-392 [AGHJ]
448
361
-
Leu
TAA
[ENA]
¡û
>W11180150
AGHK01000350
Bacillota
Streptococcus sobrinus TCI-395 [AGHK]
60
147
+
Leu
TAA
[ENA]
¡û
>W11180200
AGHM01000367
Bacillota
Streptococcus sobrinus TCI-2 [AGHM]
255
168
-
Leu
TAA
[ENA]
¡û
>W11180327
AGHQ01000361
Bacillota
Streptococcus sobrinus TCI-172 [AGHQ]
60
147
+
Leu
TAA
[ENA]
¡û
>W11180359
AGHR01000627
Bacillota
Streptococcus sobrinus TCI-175 [AGHR]
60
147
+
Leu
TAA
[ENA]
¡û
>W11180386
AGHS01000786
Bacillota
Streptococcus sobrinus TCI-194 [AGHS]
255
168
-
Leu
TAA
[ENA]
¡û
>W11180441
AGHU01000274
Bacillota
Streptococcus sobrinus TCI-215 [AGHU]
60
147
+
Leu
TAA
[ENA]
¡û
>W11180471
AGHV01003853
Bacillota
Streptococcus sobrinus TCI-336 [AGHV]
207
120
-
Leu
TAA
[ENA]
¡û
>C161059278
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1941401
1941316
-
Leu
TAA
[Ensembl]
¡û
>C161059288
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
1935591
1935506
-
Leu
TAA
[Ensembl]
¡û
>C161059340
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
5423
5508
+
Leu
TAA
[Ensembl]
¡û
>C161059350
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
11255
11340
+
Leu
TAA
[Ensembl]
¡û
>C161059403
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
1813803
1813888
+
Leu
TAA
[Ensembl]
¡û
>W121016378
AGQX01000090
Bacillota
Lactococcus garvieae TB25 [AGQX]
29045
28956
-
Leu
TAA
[ENA]
¡û
>W121016425
AGQY01000137
Bacillota
Lactococcus garvieae LG9 [AGQY]
6591
6502
-
Leu
TAA
[ENA]
¡û
>W121081188
AKFO01000004
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
92
179
+
Leu
TAA
[ENA]
¡û
>W1610044307
BBAL01000007
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119963
119878
-
Leu
TAA
[ENA]
¡û
>W1610843998
LPVR01000002
Bacillota
Streptococcus equinus [LPVR]
8292
8207
-
Leu
TAA
[ENA]
¡û
>W1610844007
LPVR01000002
Bacillota
Streptococcus equinus [LPVR]
2460
2375
-
Leu
TAA
[ENA]
¡û
>W1610844023
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
798382
798297
-
Leu
TAA
[ENA]
¡û
>W1610844033
LPVR01000005
Bacillota
Streptococcus equinus [LPVR]
792550
792465
-
Leu
TAA
[ENA]
¡û
>W1610856904
LQOE01000087
Bacillota
Lactococcus sp. DD01 [LQOE]
37
126
+
Leu
TAA
[ENA]
¡û
>W1610857074
LQOI01000158
Bacillota
Streptococcus lutetiensis [LQOI]
263
178
-
Leu
TAA
[ENA]
¡û
>W1610858902
LQRG01000019
Bacillota
Streptococcus sp. DD12 [LQRG]
445
530
+
Leu
TAA
[ENA]
¡û
>W1611012242
LXWL01000009
Bacillota
Lactococcus garvieae [LXWL]
239396
239307
-
Leu
TAA
[ENA]
¡û
>W1710041467
BBAL01000007
Bacillota
Lactococcus fujiensis JCM 16395 [BBAL]
119963
119878
-
Leu
TAA
[ENA]
¡û
>W1710568208
FOTJ01000023
Bacillota
Lactococcus garvieae [FOTJ]
906
993
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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