This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.479077 (23 seq.)
>C171100122
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
4141685
4141760
+
Ala
TGC
-
¡û
>C171100124
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
4147363
4147438
+
Ala
TGC
-
¡û
>C171100136
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
2516118
2516043
-
Ala
TGC
-
¡û
>C171100138
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
2510439
2510364
-
Ala
TGC
-
¡û
>C171100140
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
2504760
2504685
-
Ala
TGC
-
¡û
>WENV180040647
LLBZ010004276
[LLBZ] soil metagenome; soil from tomato rhizosphere
1165
1240
+
Ala
TGC
[ENA]
¢þ
>WENV180692323
OCZS010467535
[OCZS] soil metagenome; soil
10
85
+
Ala
TGC
[ENA]
¢þ
>WENV181188806
OEOE01386326
[OEOE] activated sludge metagenome; Activated Sludge
164
89
-
Ala
TGC
[ENA]
¢þ
>WENV181416210
OGCL01061112
[OGCL] hot springs metagenome; Hot spring water
900
825
-
Ala
TGC
[ENA]
¢þ
>WENV181840240
OGVO01057703
[OGVO] freshwater metagenome; freshwater
507
432
-
Ala
TGC
[ENA]
¢þ
>WENV170345560
CETF01031274
[CETF] marine metagenome genome assembly TARA_109_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
497
422
-
Ala
TGC
[ENA]
¢þ
>W1910911040
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1797543
1797468
-
Ala
TGC
[ENA]
¡û
>W1910911042
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1791865
1791790
-
Ala
TGC
[ENA]
¡û
>W1910911077
NHNI01000004
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
548
473
-
Ala
TGC
[ENA]
¡û
>W1510018770
BBUL01000055
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
3594
3519
-
Ala
TGC
[ENA]
¡û
>W1511548644
JZSC01000004
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
94911
94836
-
Ala
TGC
[ENA]
¡û
>W1511548652
JZSC01000007
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1416119
1416194
+
Ala
TGC
[ENA]
¡û
>W1511548654
JZSC01000007
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
1421824
1421899
+
Ala
TGC
[ENA]
¡û
>W1511548660
JZSC01000010
Gammaproteobacteria
Cellvibrio sp. pealriver [JZSC]
4958
5033
+
Ala
TGC
[ENA]
¡û
>W121045202
AICM01000020
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
3258
3183
-
Ala
TGC
[ENA]
¡û
>W1610005726
ALBT01000125
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
2105
2180
+
Ala
TGC
[ENA]
¡û
>ENV000399
AF422526
Environmental sample from ENV division of INSDC
324
399
+
Ala
TGC
[ENA]
>W1710005487
ALBT01000125
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
2105
2180
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK