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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.4796 (99 seq.)
>W1711260669
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
77277
77370
+
Ser
GGA
[ENA]
¡û
>W1711299307
MAGB01000178
Bacillota
Limosilactobacillus reuteri [MAGB]
4968
5061
+
Ser
GGA
[ENA]
¡û
>W1711329074
MBLQ01000131
Bacillota
Limosilactobacillus reuteri [MBLQ]
1218
1125
-
Ser
GGA
[ENA]
¡û
>W1711329141
MBLR01000158
Bacillota
Limosilactobacillus reuteri [MBLR]
1018
925
-
Ser
GGA
[ENA]
¡û
>W1711329205
MBLS01000166
Bacillota
Limosilactobacillus reuteri [MBLS]
1219
1126
-
Ser
GGA
[ENA]
¡û
>W1711345313
MCNS01000031
Bacillota
Limosilactobacillus reuteri [MCNS]
598
691
+
Ser
GGA
[ENA]
¡û
>W1711433681
MIMJ01000065
Bacillota
Limosilactobacillus reuteri [MIMJ]
595
502
-
Ser
GGA
[ENA]
¡û
>W1711433845
MIMN01000033
Bacillota
Limosilactobacillus reuteri [MIMN]
93090
92997
-
Ser
GGA
[ENA]
¡û
>W1711433949
MIMO01000115
Bacillota
Limosilactobacillus reuteri [MIMO]
5484
5391
-
Ser
GGA
[ENA]
¡û
>W1711433987
MIMP01000040
Bacillota
Limosilactobacillus reuteri [MIMP]
595
502
-
Ser
GGA
[ENA]
¡û
>W1711434196
MIMT01000130
Bacillota
Limosilactobacillus reuteri [MIMT]
5484
5391
-
Ser
GGA
[ENA]
¡û
>W1711434226
MIMU01000045
Bacillota
Limosilactobacillus reuteri [MIMU]
947
854
-
Ser
GGA
[ENA]
¡û
>W1711434246
MIMU01000106
Bacillota
Limosilactobacillus reuteri [MIMU]
100961
100868
-
Ser
GGA
[ENA]
¡û
>W1711434313
MIMV01000209
Bacillota
Limosilactobacillus reuteri [MIMV]
13303
13210
-
Ser
GGA
[ENA]
¡û
>W1711434353
MIMW01000027
Bacillota
Limosilactobacillus reuteri [MIMW]
595
502
-
Ser
GGA
[ENA]
¡û
>W1711767285
MUZP01000020
Bacillota
Limosilactobacillus reuteri [MUZP]
38779
38686
-
Ser
GGA
[ENA]
¡û
>W1711790928
MWIJ01000048
Bacillota
Limosilactobacillus reuteri [MWIJ]
36244
36151
-
Ser
GGA
[ENA]
¡û
>W1711799156
MWVS01000073
Bacillota
Limosilactobacillus reuteri [MWVS]
36815
36722
-
Ser
GGA
[ENA]
¡û
>W1711942373
NBBD01000018
Bacillota
Limosilactobacillus reuteri [NBBD]
56874
56781
-
Ser
GGA
[ENA]
¡û
>W1711942469
NBBE01000099
Bacillota
Limosilactobacillus reuteri [NBBE]
1256
1163
-
Ser
GGA
[ENA]
¡û
>W1711942507
NBBF01000129
Bacillota
Limosilactobacillus reuteri [NBBF]
3532
3439
-
Ser
GGA
[ENA]
¡û
>W1712036458
NFHN01000024
Bacillota
Limosilactobacillus reuteri [NFHN]
360
453
+
Ser
GGA
[ENA]
¡û
>W1712041143
NFKV01000064
Bacillota
Limosilactobacillus reuteri [NFKV]
360
453
+
Ser
GGA
[ENA]
¡û
>w015026
AAOV01000008
Bacillota
Limosilactobacillus reuteri JCM 1112 [AAOV]
37733
37637
-
Ser
GGA
[ENA]
¡û
>WENV180341918
OBLI01279123
[OBLI] pig gut metagenome; faeces
157
64
-
Ser
GGA
[ENA]
¢þ
>WENV180440935
OBWV01010438
[OBWV] human gut metagenome; faeces
107
200
+
Ser
GGA
[ENA]
¢þ
>WENV180467930
OBYJ01000120
[OBYJ] human gut metagenome; faeces
71707
71614
-
Ser
GGA
[ENA]
¢þ
>WENV181219927
OFCP01004822
[OFCP] metagenome; Human gut stool
1555
1646
+
Ser
GGA
[ENA]
¢þ
>WENV182531278
OIWV01065598
[OIWV] human gut metagenome; faeces
231
138
-
Ser
GGA
[ENA]
¢þ
>C181181828
CP029613
Bacillota
Limosilactobacillus reuteri Byun-re-01 [CP029613]
1832942
1832849
-
Ser
GGA
-
¡û
>C181181946
CP029615
Bacillota
Limosilactobacillus reuteri SKKU-OGDONS-01 [CP029615]
2022849
2022942
+
Ser
GGA
-
¡û
>C191146510
CP035790
Bacillota
Limosilactobacillus reuteri ATG-F4 [CP035790]
504811
504718
-
Ser
GGA
-
¡û
>W09123354
ACGW01000267
Bacillota
Limosilactobacillus reuteri SD2112 [ACGW]
49
142
+
Ser
GGA
[ENA]
¡û
>W09123876
ACHG01000040
Bacillota
Limosilactobacillus reuteri CF48-3A [ACHG]
49
142
+
Ser
GGA
[ENA]
¡û
>W09127490
ACLB01000002
Bacillota
Limosilactobacillus reuteri MM2-3 [ACLB]
49
142
+
Ser
GGA
[ENA]
¡û
>W1910340685
FTOY01000008
Bacillota
Limosilactobacillus caccae Marseille-P3519 [FTOY]
184
276
+
Ser
GGA
[ENA]
¡û
>C141005336
CP006603
Bacillota
Limosilactobacillus reuteri TD1 [CP006603]
1520198
1520105
-
Ser
GGA
[Ensembl]
¡û
>W1910902712
NGPA01000098
Bacillota
Limosilactobacillus reuteri 609l [NGPA]
1336
1243
-
Ser
GGA
[ENA]
¡û
>W1910902736
NGPB01000015
Bacillota
Limosilactobacillus reuteri 609i [NGPB]
58733
58640
-
Ser
GGA
[ENA]
¡û
>W1910902930
NGPE01000072
Bacillota
Limosilactobacillus reuteri 601l [NGPE]
37694
37601
-
Ser
GGA
[ENA]
¡û
>W1910902989
NGPF01000058
Bacillota
Limosilactobacillus reuteri 601g [NGPF]
37360
37267
-
Ser
GGA
[ENA]
¡û
>W1910903072
NGPG01000179
Bacillota
Limosilactobacillus reuteri 601f [NGPG]
90
183
+
Ser
GGA
[ENA]
¡û
>W1910903268
NGPJ01000061
Bacillota
Limosilactobacillus reuteri 117n [NGPJ]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910903302
NGPK01000014
Bacillota
Limosilactobacillus reuteri 114q [NGPK]
37694
37601
-
Ser
GGA
[ENA]
¡û
>W1910903430
NGPM01000020
Bacillota
Limosilactobacillus reuteri 114g [NGPM]
39295
39202
-
Ser
GGA
[ENA]
¡û
>W1910903774
NGPR01000073
Bacillota
Limosilactobacillus reuteri 107k [NGPR]
361
454
+
Ser
GGA
[ENA]
¡û
>W1910903899
NGPT01000030
Bacillota
Limosilactobacillus reuteri 107e [NGPT]
176
269
+
Ser
GGA
[ENA]
¡û
>W1910904067
NGPV01000085
Bacillota
Limosilactobacillus reuteri 105p [NGPV]
1032
939
-
Ser
GGA
[ENA]
¡û
>W1910904136
NGPW01000139
Bacillota
Limosilactobacillus reuteri 105o [NGPW]
1027
934
-
Ser
GGA
[ENA]
¡û
>W1910904195
NGPX01000067
Bacillota
Limosilactobacillus reuteri 105n [NGPX]
1027
934
-
Ser
GGA
[ENA]
¡û
>W1910904269
NGPY01000083
Bacillota
Limosilactobacillus reuteri 105k [NGPY]
176
269
+
Ser
GGA
[ENA]
¡û
>W1910904327
NGPZ01000064
Bacillota
Limosilactobacillus reuteri 105i [NGPZ]
2252
2159
-
Ser
GGA
[ENA]
¡û
>W1910904455
NGQB01000045
Bacillota
Limosilactobacillus reuteri 105c [NGQB]
2255
2162
-
Ser
GGA
[ENA]
¡û
>W1910904531
NGQC01000105
Bacillota
Limosilactobacillus reuteri 103v [NGQC]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910904589
NGQD01000135
Bacillota
Limosilactobacillus reuteri 103p [NGQD]
187
280
+
Ser
GGA
[ENA]
¡û
>W1910904710
NGQF01000049
Bacillota
Limosilactobacillus reuteri 103b [NGQF]
211
304
+
Ser
GGA
[ENA]
¡û
>W1910910870
NHMT01000001
Bacillota
Limosilactobacillus reuteri I49 [NHMT]
1804210
1804303
+
Ser
GGA
[ENA]
¡û
>W1911569338
PCYS01000151
Bacillota
Lactobacillus sp. UMNPBX18 [PCYS]
108
201
+
Ser
GGA
[ENA]
¡û
>W1911569627
PCYX01000113
Bacillota
Lactobacillus sp. UMNPBX13 [PCYX]
3445
3352
-
Ser
GGA
[ENA]
¡û
>W1911569931
PCZC01000087
Bacillota
Lactobacillus sp. UMNPBX7 [PCZC]
69
162
+
Ser
GGA
[ENA]
¡û
>W1911570131
PCZG01000024
Bacillota
Lactobacillus sp. UMNPBX3 [PCZG]
589
682
+
Ser
GGA
[ENA]
¡û
>W1911630747
PTLS01000039
Bacillota
Limosilactobacillus reuteri R2lc [PTLS]
2177
2084
-
Ser
GGA
[ENA]
¡û
>W1911633702
PUXG01000020
Bacillota
Limosilactobacillus reuteri 2010 [PUXG]
367398
367305
-
Ser
GGA
[ENA]
¡û
>W1810452899
PZQN01000057
Bacillota
Limosilactobacillus reuteri LR5A [PZQN]
68
161
+
Ser
GGA
[ENA]
¡û
>W1810488549
QAZL01000036
Bacillota
Limosilactobacillus reuteri DS22_10 [QAZL]
261
354
+
Ser
GGA
[ENA]
¡û
>W1810488724
QAZN01000065
Bacillota
Limosilactobacillus reuteri DS12_10 [QAZN]
229
136
-
Ser
GGA
[ENA]
¡û
>W1810597756
QGHO01000159
Bacillota
Limosilactobacillus reuteri LR19 [QGHO]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810597844
QGHP01000183
Bacillota
Limosilactobacillus reuteri LR18 [QGHP]
368
461
+
Ser
GGA
[ENA]
¡û
>W1810597921
QGHQ01000096
Bacillota
Limosilactobacillus reuteri LR17 [QGHQ]
368
461
+
Ser
GGA
[ENA]
¡û
>W1810597986
QGHR01000131
Bacillota
Limosilactobacillus reuteri LR13 [QGHR]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810598021
QGHS01000219
Bacillota
Limosilactobacillus reuteri LR12 [QGHS]
138
231
+
Ser
GGA
[ENA]
¡û
>W1810598076
QGHT01000019
Bacillota
Limosilactobacillus reuteri LR10 [QGHT]
368
461
+
Ser
GGA
[ENA]
¡û
>W1810598256
QGHV01000149
Bacillota
Limosilactobacillus reuteri LR9 [QGHV]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810598373
QGHX01000218
Bacillota
Limosilactobacillus reuteri LR7 [QGHX]
138
231
+
Ser
GGA
[ENA]
¡û
>W1810598433
QGHY01000221
Bacillota
Limosilactobacillus reuteri LR6 [QGHY]
138
231
+
Ser
GGA
[ENA]
¡û
>W1810598526
QGHZ01000113
Bacillota
Limosilactobacillus reuteri LR14 [QGHZ]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810598599
QGIA01000128
Bacillota
Limosilactobacillus reuteri LR11 [QGIA]
1055
962
-
Ser
GGA
[ENA]
¡û
>W1810598629
QGIB01000020
Bacillota
Limosilactobacillus reuteri LR3 [QGIB]
1012
919
-
Ser
GGA
[ENA]
¡û
>W1810598741
QGIC01000133
Bacillota
Limosilactobacillus reuteri LR2 [QGIC]
104
197
+
Ser
GGA
[ENA]
¡û
>W1810598812
QGID01000117
Bacillota
Limosilactobacillus reuteri LR1 [QGID]
104
197
+
Ser
GGA
[ENA]
¡û
>W10124150
AEAW01000100
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
52
145
+
Ser
GGA
[ENA]
¡û
>W10124201
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
40967
40874
-
Ser
GGA
[ENA]
¡û
>C11113638
CP002844
Bacillota
Limosilactobacillus reuteri SD2112 [CP002844]
330020
329927
-
Ser
GGA
[Ensembl]
¡û
>W11130987
AEAW01000100
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
52
145
+
Ser
GGA
[ENA]
¡û
>W11131038
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
40967
40874
-
Ser
GGA
[ENA]
¡û
>W11186033
CACS02000122
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
993
900
-
Ser
GGA
[ENA]
¡û
>C161087521
CP015408
Bacillota
Limosilactobacillus reuteri I49 [CP015408]
1010038
1009945
-
Ser
GGA
-
¡û
>W121126773
CACS02000122
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
993
900
-
Ser
GGA
[ENA]
¡û
>W1610033679
AZDD01000046
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
574
667
+
Ser
GGA
[ENA]
¡û
>W1610104866
CZDA01000043
Bacillota
Limosilactobacillus reuteri [CZDA]
70
163
+
Ser
GGA
[ENA]
¡û
>W1610104918
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
144253
144160
-
Ser
GGA
[ENA]
¡û
>W1610105022
CZDC01000184
Bacillota
Limosilactobacillus reuteri [CZDC]
121
214
+
Ser
GGA
[ENA]
¡û
>W1610105098
CZDD01000190
Bacillota
Limosilactobacillus reuteri [CZDD]
71
164
+
Ser
GGA
[ENA]
¡û
>W1611022799
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
77277
77370
+
Ser
GGA
[ENA]
¡û
>W1710030857
AZDD01000046
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
574
667
+
Ser
GGA
[ENA]
¡û
>W1710107570
CZDA01000043
Bacillota
Limosilactobacillus reuteri [CZDA]
70
163
+
Ser
GGA
[ENA]
¡û
>W1710107622
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
144253
144160
-
Ser
GGA
[ENA]
¡û
>W1710107726
CZDC01000184
Bacillota
Limosilactobacillus reuteri [CZDC]
121
214
+
Ser
GGA
[ENA]
¡û
>W1710107802
CZDD01000190
Bacillota
Limosilactobacillus reuteri [CZDD]
71
164
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK