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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47989 (115 seq.)
>W1710778298
LJCV01000099
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
45505
45418
-
Leu
GAG
[ENA]
¡û
>W1710778312
LJCV01000188
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
91710
91795
+
Leu
GAG
[ENA]
¡û
>W1710882160
LMTQ02000006
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
118904
118817
-
Leu
GAG
[ENA]
¡û
>W1710882211
LMTQ02000052
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
1743
1658
-
Leu
GAG
[ENA]
¡û
>W1711053927
LRTJ01000105
Actinomycetota
Frankia casuarinae BR [LRTJ]
20072
19987
-
Leu
GAG
[ENA]
¡û
>W1711169948
LWAB01000011
Actinomycetota
Streptomyces sp. H-KF8 [LWAB]
997807
997892
+
Leu
GAG
[ENA]
¡û
>W1711328868
MBLN01000003
Actinomycetota
Pseudofrankia sp. EUN1h EUN1h [MBLN]
58895
58808
-
Leu
GAG
[ENA]
¡û
>W1711328943
MBLO01000066
Actinomycetota
Pseudofrankia sp. BMG5.36 BMG5.36 [MBLO]
27905
27990
+
Leu
GAG
[ENA]
¡û
>W1711328998
MBLP01000052
Actinomycetota
Frankia sp. CgIS1 [MBLP]
81399
81484
+
Leu
GAG
[ENA]
¡û
>W1711603571
MOMD01000032
Actinomycetota
Frankia sp. CcI156 [MOMD]
20368
20283
-
Leu
GAG
[ENA]
¡û
>W1711612440
MOWP01000022
Actinomycetota
Frankia sp. CcI49 [MOWP]
2975
2888
-
Leu
GAG
[ENA]
¡û
>W1711678706
MRUJ01000262
Actinomycetota
Frankia sp. KB5 [MRUJ]
3720
3633
-
Leu
GAG
[ENA]
¡û
>W1711784668
MWFK01000001
Actinomycetota
Streptomyces sp. M41(2017) [MWFK]
4696448
4696533
+
Leu
GAG
[ENA]
¡û
>W1711784696
MWFK01000002
Actinomycetota
Streptomyces sp. M41(2017) [MWFK]
1963894
1963979
+
Leu
GAG
[ENA]
¡û
>W131110017
APIV01000034
Actinomycetota
Streptomyces sp. FXJ7.023 [APIV]
34791
34878
+
Leu
GAG
[ENA]
¡û
>W131234254
AUKQ01000004
Actinomycetota
Streptomyces sp. CNH287 [AUKQ]
181859
181944
+
Leu
GAG
[ENA]
¡û
>W131234269
AUKQ01000008
Actinomycetota
Streptomyces sp. CNH287 [AUKQ]
133365
133450
+
Leu
GAG
[ENA]
¡û
>W131234570
AUKW01000002
Actinomycetota
Streptomyces sp. TAA204 [AUKW]
377327
377242
-
Leu
GAG
[ENA]
¡û
>W131241217
BARF01000147
Actinomycetota
Streptomyces prunicolor NBRC 13075 [BARF]
3899
3812
-
Leu
GAG
[ENA]
¡û
>C171051125
CP016795
Actinomycetota
Streptomyces olivaceus KLBMP 5084 [CP016795]
6837489
6837576
+
Leu
GAG
-
¡û
>C000345
CP000481
Actinomycetota
Acidothermus cellulolyticus 11B 11B; ATCC 43068 [CP000481]
1294313
1294229
-
Leu
GAG
[Ensembl]
¡û
>W131011089
AICW01000492
Actinomycetota
Saccharomonospora iraqiensis IQ-H1 [AICW]
84943
84856
-
Leu
GAG
[ENA]
¡û
>W131011129
AICX01000361
Actinomycetota
Saccharomonospora halophila 8 [AICX]
14395
14482
+
Leu
GAG
[ENA]
¡û
>C009553
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
2386761
2386845
+
Leu
GAG
[Ensembl]
¡û
>WENV180018031
FSXZ01002342
[FSXZ] metagenome; soil
1830
1745
-
Leu
GAG
[ENA]
¢þ
>WENV180344145
OBLK01246355
[OBLK] soil metagenome; Clay
248
163
-
Leu
GAG
[ENA]
¢þ
>W141037487
ALNP01000003
Actinomycetota
Streptomyces sp. AA0539 [ALNP]
66393
66308
-
Leu
GAG
[ENA]
¡û
>W141037511
ALNP01000018
Actinomycetota
Streptomyces sp. AA0539 [ALNP]
18145
18058
-
Leu
GAG
[ENA]
¡û
>WENV180693687
OCZS011457252
[OCZS] soil metagenome; soil
69
156
+
Leu
GAG
[ENA]
¢þ
>WENV181163281
OEIO01184615
[OEIO] marine metagenome; sea ice
175
260
+
Leu
GAG
[ENA]
¢þ
>WENV181192273
OEPS010528216
[OEPS] soil metagenome; soil
116
30
-
Leu
GAG
[ENA]
¢þ
>WENV181295005
OFHH01092272
[OFHH] soil metagenome; Clay
335
249
-
Leu
GAG
[ENA]
¢þ
>WENV181296342
OFHJ01027535
[OFHJ] soil metagenome; Clay
412
325
-
Leu
GAG
[ENA]
¢þ
>WENV181298207
OFHL01049549
[OFHL] soil metagenome; Clay
330
245
-
Leu
GAG
[ENA]
¢þ
>W141142595
AWQV01000252
Actinomycetota
Streptomycetaceae bacterium MP113-05 [AWQV]
2872
2785
-
Leu
GAG
[ENA]
¡û
>W141195314
AYTZ01000057
Actinomycetota
Frankia sp. CcI6 [AYTZ]
20342
20257
-
Leu
GAG
[ENA]
¡û
>WENV183616652
OOED01116448
[OOED] marine metagenome; seawater
291
376
+
Leu
GAG
[ENA]
¢þ
>WENV183629855
OOGQ01022860
[OOGQ] marine metagenome; seawater
116
31
-
Leu
GAG
[ENA]
¢þ
>WENV183630069
OOGR01009685
[OOGR] marine metagenome; seawater
574
489
-
Leu
GAG
[ENA]
¢þ
>WENV183748316
PPFU01028225
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1203
1117
-
Leu
GAG
[ENA]
¢þ
>W141427378
JENI01000081
Actinomycetota
Frankia casuarinae Thr [JENI]
10971
10886
-
Leu
GAG
[ENA]
¡û
>WENV170564721
CZKW01000475
[CZKW] soil metagenome genome assembly CiPEHR-AK-2010-FBin.13, contig:; soil
2523
2610
+
Leu
GAG
[ENA]
¢þ
>WENV170572980
FLOH01002026
[FLOH] marine metagenome; water
4289
4374
+
Leu
GAG
[ENA]
¢þ
>WENV170953003
MEHZ011624535
[MEHZ] marine metagenome; marine surface water
1214
1127
-
Leu
GAG
[ENA]
¢þ
>C191064988
CP029617
Actinomycetota
Streptomyces sp. WAC 01529 [CP029617]
1508474
1508561
+
Leu
GAG
-
¡û
>C191065023
CP029617
Actinomycetota
Streptomyces sp. WAC 01529 [CP029617]
7343959
7344046
+
Leu
GAG
-
¡û
>W09102716
AAIE01000054
Actinomycetota
Frankia casuarinae CcI3 [AAIE]
18815
18730
-
Leu
GAG
[ENA]
¡û
>W141765210
JODF01000007
Actinomycetota
Streptomyces sp. NRRL S-920 [JODF]
38702
38789
+
Leu
GAG
[ENA]
¡û
>W141765259
JODF01000060
Actinomycetota
Streptomyces sp. NRRL S-920 [JODF]
8183
8096
-
Leu
GAG
[ENA]
¡û
>W141765379
JODI01000004
Actinomycetota
Streptomyces violaceoruber [JODI]
201277
201362
+
Leu
GAG
[ENA]
¡û
>W141767751
JOEV01000002
Actinomycetota
Streptomyces cellulosae [JOEV]
505886
505971
+
Leu
GAG
[ENA]
¡û
>W141768565
JOFH01000015
Actinomycetota
Streptomyces olivaceus [JOFH]
59891
59804
-
Leu
GAG
[ENA]
¡û
>W141773134
JOIG01000002
Actinomycetota
Streptomyces sp. NRRL F-2890 [JOIG]
344442
344529
+
Leu
GAG
[ENA]
¡û
>W141773138
JOIG01000004
Actinomycetota
Streptomyces sp. NRRL F-2890 [JOIG]
535679
535766
+
Leu
GAG
[ENA]
¡û
>W141803604
JPGU01000063
Actinomycetota
Frankia sp. CeD [JPGU]
6146
6231
+
Leu
GAG
[ENA]
¡û
>W141804398
JPHT01000016
Actinomycetota
Frankia sp. Allo2 [JPHT]
20436
20351
-
Leu
GAG
[ENA]
¡û
>W141817967
JQLE01000011
Actinomycetota
Streptomyces mirabilis [JQLE]
8726
8641
-
Leu
GAG
[ENA]
¡û
>W141817968
JQLE01000014
Actinomycetota
Streptomyces mirabilis [JQLE]
167150
167065
-
Leu
GAG
[ENA]
¡û
>W1910001428
AQRJ01000033
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
42474
42387
-
Leu
GAG
[ENA]
¡û
>W1910001438
AQRJ01000040
Actinomycetota
Streptomyces sp. AmelKG-E11A [AQRJ]
154634
154547
-
Leu
GAG
[ENA]
¡û
>W1911580870
PENI01000012
Actinomycetota
Streptomyces shenzhenensis 193 [PENI]
105056
104970
-
Leu
GAG
[ENA]
¡û
>SRA1002194
SRR001308.297915
Metagenomic characterization of a wastewater treatment plant (SRP000180)
142
230
+
Leu
GAG
[SRA]
>W1810504371
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
4964120
4964035
-
Leu
GAG
[ENA]
¡û
>W1810579897
QEST01000014
Actinomycetota
Streptomyces sp. PT12 [QEST]
26937
26850
-
Leu
GAG
[ENA]
¡û
>W1810579926
QEST01000224
Actinomycetota
Streptomyces sp. PT12 [QEST]
4171
4086
-
Leu
GAG
[ENA]
¡û
>C151062013
CP009922
Actinomycetota
Streptomyces xiamenensis 318 [CP009922]
569543
569630
+
Leu
GAG
-
¡û
>C151062036
CP009922
Actinomycetota
Streptomyces xiamenensis 318 [CP009922]
5322024
5322111
+
Leu
GAG
-
¡û
>W1510012719
BBNN01000022
Actinomycetota
Streptomyces sp. NBRC 110035 [BBNN]
133141
133228
+
Leu
GAG
[ENA]
¡û
>W1510013212
BBOM01000008
Actinomycetota
Streptomyces sp. NBRC 109706 [BBOM]
217585
217498
-
Leu
GAG
[ENA]
¡û
>W1510013218
BBOM01000011
Actinomycetota
Streptomyces sp. NBRC 109706 [BBOM]
11391
11306
-
Leu
GAG
[ENA]
¡û
>W10111536
ADDL01000009
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
13157
13244
+
Leu
GAG
[ENA]
¡û
>W1510060969
CCXT01000488
Actinomycetota
Candidatus Streptomyces massiliensis massiliensis AP10 [CCXT]
2284
2369
+
Leu
GAG
[ENA]
¡û
>W1510060981
CCXT01001130
Actinomycetota
Candidatus Streptomyces massiliensis massiliensis AP10 [CCXT]
21942
21857
-
Leu
GAG
[ENA]
¡û
>C11109206
CP002299
Actinomycetota
Pseudofrankia inefficax EuI1c [CP002299]
3891466
3891553
+
Leu
GAG
[Ensembl]
¡û
>W11114463
ADDL01000009
Actinomycetota
Pseudofrankia inefficax EuI1c [ADDL]
13157
13244
+
Leu
GAG
[ENA]
¡û
>W1511573839
LANG01000011
Actinomycetota
Pseudofrankia sp. DC12 DC12 [LANG]
1374221
1374134
-
Leu
GAG
[ENA]
¡û
>W11181142
AGIT01000026
Actinomycetota
Saccharomonospora iraqiensis YIM 90007 [AGIT]
4455
4542
+
Leu
GAG
[ENA]
¡û
>W1610049861
BBFI01000081
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
1175
1260
+
Leu
GAG
[ENA]
¡û
>W1610049862
BBFI01000099
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
215
128
-
Leu
GAG
[ENA]
¡û
>W1610163602
FAOZ01000045
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
32262
32347
+
Leu
GAG
[ENA]
¡û
>W1610551407
JYIJ01000018
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
762440
762353
-
Leu
GAG
[ENA]
¡û
>W1610578246
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
2882452
2882539
+
Leu
GAG
[ENA]
¡û
>W1610597120
LFCW01000004
Actinomycetota
Frankia sp. R43 [LFCW]
867589
867674
+
Leu
GAG
[ENA]
¡û
>W1610632269
LIPS01000079
Actinomycetota
Streptomyces hirsutus cyanoalbus [LIPS]
2128
2043
-
Leu
GAG
[ENA]
¡û
>W1610633142
LIQM01000791
Actinomycetota
Streptomyces prasinopilosus emeiensis [LIQM]
1706
1621
-
Leu
GAG
[ENA]
¡û
>W1610633152
LIQN01000015
Actinomycetota
Streptomyces alboniger [LIQN]
24501
24588
+
Leu
GAG
[ENA]
¡û
>W1610633474
LIQT01000093
Actinomycetota
Streptomyces hirsutus [LIQT]
15727
15814
+
Leu
GAG
[ENA]
¡û
>W1610634249
LIRG01000145
Actinomycetota
Streptomyces prasinopilosus [LIRG]
2963
3048
+
Leu
GAG
[ENA]
¡û
>W1610642517
LJCV01000099
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
45505
45418
-
Leu
GAG
[ENA]
¡û
>W1610642531
LJCV01000188
Actinomycetota
Actinobacteria bacterium OK074 [LJCV]
91710
91795
+
Leu
GAG
[ENA]
¡û
>W1610744113
LMTQ01000175
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
164
251
+
Leu
GAG
[ENA]
¡û
>W1610744140
LMTQ01000632
Actinomycetota
Streptomyces sp. AVP053U2 [LMTQ]
1743
1658
-
Leu
GAG
[ENA]
¡û
>W1610895115
LRTJ01000105
Actinomycetota
Frankia casuarinae BR [LRTJ]
20072
19987
-
Leu
GAG
[ENA]
¡û
>W1610979100
LWAB01000011
Actinomycetota
Streptomyces sp. H-KF8 [LWAB]
997807
997892
+
Leu
GAG
[ENA]
¡û
>W1710046260
BBFI01000081
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
1175
1260
+
Leu
GAG
[ENA]
¡û
>W1710046261
BBFI01000099
Actinomycetota
Streptomyces sp. JCM 17819 [BBFI]
215
128
-
Leu
GAG
[ENA]
¡û
>W1710165269
FAOZ01000045
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
32262
32347
+
Leu
GAG
[ENA]
¡û
>W1710503751
FMHJ01000006
Actinomycetota
Streptomyces sp. WMMB 714 [FMHJ]
385638
385553
-
Leu
GAG
[ENA]
¡û
>W1710503953
FMHM01000022
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
154634
154547
-
Leu
GAG
[ENA]
¡û
>W1710503963
FMHM01000028
Actinomycetota
Streptomyces sp. AmelKG-E11A Streptomyces [FMHM]
42474
42387
-
Leu
GAG
[ENA]
¡û
>W1710512434
FMZK01000007
Actinomycetota
Streptomyces prasinopilosus emeiensis [FMZK]
191222
191307
+
Leu
GAG
[ENA]
¡û
>W1710539076
FNVB01000002
Actinomycetota
Saccharopolyspora kobensis hirsuta [FNVB]
922756
922671
-
Leu
GAG
[ENA]
¡û
>W1710569651
FOUP01000002
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
297785
297698
-
Leu
GAG
[ENA]
¡û
>W1710576457
FPAB01000001
Actinomycetota
Streptomyces harbinensis [FPAB]
391101
391016
-
Leu
GAG
[ENA]
¡û
>W1710576463
FPAB01000002
Actinomycetota
Streptomyces harbinensis [FPAB]
280830
280743
-
Leu
GAG
[ENA]
¡û
>W1710661680
JYIJ01000018
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIJ]
762440
762353
-
Leu
GAG
[ENA]
¡û
>W1710697119
LAXD01000001
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [LAXD]
2882452
2882539
+
Leu
GAG
[ENA]
¡û
>W1710717938
LFBV01000004
Actinomycetota
Streptomyces uncialis [LFBV]
735919
736006
+
Leu
GAG
[ENA]
¡û
>W1710717945
LFBV01000006
Actinomycetota
Streptomyces uncialis [LFBV]
408878
408965
+
Leu
GAG
[ENA]
¡û
>W1710718279
LFCW01000004
Actinomycetota
Frankia sp. R43 [LFCW]
867589
867674
+
Leu
GAG
[ENA]
¡û
>W1710766655
LIPS01000079
Actinomycetota
Streptomyces hirsutus cyanoalbus [LIPS]
2128
2043
-
Leu
GAG
[ENA]
¡û
>W1710767574
LIQM01000791
Actinomycetota
Streptomyces prasinopilosus emeiensis [LIQM]
1706
1621
-
Leu
GAG
[ENA]
¡û
>W1710767584
LIQN01000015
Actinomycetota
Streptomyces alboniger [LIQN]
24501
24588
+
Leu
GAG
[ENA]
¡û
>W1710767906
LIQT01000093
Actinomycetota
Streptomyces hirsutus [LIQT]
15727
15814
+
Leu
GAG
[ENA]
¡û
>W1710768626
LIRG01000145
Actinomycetota
Streptomyces prasinopilosus [LIRG]
2963
3048
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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