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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480346 (48 seq.)
>W1711006280
LQOE01000130
Bacillota
Lactococcus sp. DD01 [LQOE]
540
468
-
Asp
GTC
[ENA]
¡û
>W1711228336
LXWL01000014
Bacillota
Lactococcus garvieae [LXWL]
42
114
+
Asp
GTC
[ENA]
¡û
>W1711744869
MUIZ01000005
Bacillota
Lactococcus petauri 159469 [MUIZ]
224503
224431
-
Asp
GTC
[ENA]
¡û
>W1711942789
NBBK01000022
Bacillota
Lactococcus garvieae [NBBK]
9482
9410
-
Asp
GTC
[ENA]
¡û
>W131037542
AMFD01000044
Bacillota
Lactococcus garvieae I113 [AMFD]
539
467
-
Asp
GTC
[ENA]
¡û
>W131037569
AMFE01000065
Bacillota
Lactococcus garvieae Tac2 [AMFE]
9817
9745
-
Asp
GTC
[ENA]
¡û
>W131044520
AMQS01000054
Bacillota
Lactococcus garvieae DCC43 [AMQS]
520
448
-
Asp
GTC
[ENA]
¡û
>W131202434
ASWT01000006
Bacillota
Lactococcus garvieae ATCC 49156 [ASWT]
497
569
+
Asp
GTC
[ENA]
¡û
>WENV180182391
OAWO01020327
[OAWO] human gut metagenome; faeces
133
205
+
Asp
GTC
[ENA]
¢þ
>WENV180455499
OBXO01006192
[OBXO] human gut metagenome; faeces
2271
2199
-
Asp
GTC
[ENA]
¢þ
>W141096198
AVFE01000015
Bacillota
Lactococcus garvieae TRF1 [AVFE]
45781
45709
-
Asp
GTC
[ENA]
¡û
>W141096211
AVFE01000017
Bacillota
Lactococcus garvieae TRF1 [AVFE]
25532
25604
+
Asp
GTC
[ENA]
¡û
>W141238116
BBJW01000056
Bacillota
Lactococcus garvieae NBRC 100934 [BBJW]
541
469
-
Asp
GTC
[ENA]
¡û
>WENV170001714
AGFS01133041
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
242
170
-
Asp
GTC
[ENA]
¢þ
>WENV170547776
CXTS01000699
[CXTS] Human gut metagenome genome assembly, contig: mD5_contig000819.; ENVO:feces
632
560
-
Asp
GTC
[ENA]
¢þ
>WENV170547931
CXTV01000149
[CXTV] Human gut metagenome genome assembly, contig: mB2_contig000833.; ENVO:feces
114
42
-
Asp
GTC
[ENA]
¢þ
>WENV170548335
CXUD01001802
[CXUD] Human gut metagenome genome assembly, contig: mA2_contig002203.; ENVO:feces
626
554
-
Asp
GTC
[ENA]
¢þ
>WENV170549755
CXVH01002489
[CXVH] Human gut metagenome genome assembly, contig: mE6_contig003933.; ENVO:feces
773
701
-
Asp
GTC
[ENA]
¢þ
>WENV170549799
CXVI01001354
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
1488
1416
-
Asp
GTC
[ENA]
¢þ
>WENV170549816
CXVI01001710
[CXVI] Human gut metagenome genome assembly, contig: mF4_contig002506.; ENVO:feces
284
212
-
Asp
GTC
[ENA]
¢þ
>C181001704
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1355352
1355424
+
Asp
GTC
-
¡û
>C181001714
AP017373
Bacillota
Lactococcus formosensis 122061 [AP017373]
1623552
1623624
+
Asp
GTC
-
¡û
>C191044534
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1821646
1821574
-
Asp
GTC
-
¡û
>C191044544
CP026502
Bacillota
Lactococcus garvieae JJJN1 [CP026502]
1582558
1582486
-
Asp
GTC
-
¡û
>C191092440
CP032627
Bacillota
Lactococcus allomyrinae 1JSPR-7 [CP032627]
25455
25527
+
Asp
GTC
-
¡û
>C191092492
CP032627
Bacillota
Lactococcus allomyrinae 1JSPR-7 [CP032627]
1649358
1649286
-
Asp
GTC
-
¡û
>W1910583265
JXJV01000062
Bacillota
Lactococcus garvieae DSM 20684 [JXJV]
33
105
+
Asp
GTC
[ENA]
¡û
>W1810010475
BFFO01000003
Bacillota
Lactococcus termiticola NtB2 [BFFO]
220406
220334
-
Asp
GTC
[ENA]
¡û
>W1810907548
QVHV01000002
Bacillota
Lactococcus petauri AM13-9 [QVHV]
223477
223403
-
Asp
GTC
[ENA]
¡û
>W1510060206
CCXC01000001
Bacillota
Lactococcus garvieae M14 [CCXC]
1319502
1319574
+
Asp
GTC
[ENA]
¡û
>W1510060323
CCXF01000001
Bacillota
Lactococcus garvieae MT14 [CCXF]
1319502
1319574
+
Asp
GTC
[ENA]
¡û
>WENV11101786
AGFS01133041
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
242
170
-
Asp
GTC
[ENA]
¡û
>C11112714
AP009332
Bacillota
Lactococcus garvieae ATCC 49156 [AP009332]
1565631
1565559
-
Asp
GTC
[Ensembl]
¡û
>C11112764
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1819679
1819607
-
Asp
GTC
[Ensembl]
¡û
>C11112774
AP009333
Bacillota
Lactococcus garvieae Lg2 [AP009333]
1580525
1580453
-
Asp
GTC
[Ensembl]
¡û
>W1511314704
JPUJ01000053
Bacillota
Lactococcus garvieae Lg-ilsanpaik-gs201105 [JPUJ]
540
468
-
Asp
GTC
[ENA]
¡û
>W11157438
AFCC01000006
Bacillota
Lactococcus garvieae 21881 [AFCC]
2
74
+
Asp
GTC
[ENA]
¡û
>W11157504
AFCD01000046
Bacillota
Lactococcus garvieae 8831 [AFCD]
540
468
-
Asp
GTC
[ENA]
¡û
>W11162737
AFHF01000005
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
4211
4283
+
Asp
GTC
[ENA]
¡û
>W11162764
AFHF01000018
Bacillota
Lactococcus garvieae UNIUD074 [AFHF]
32399
32327
-
Asp
GTC
[ENA]
¡û
>W121016373
AGQX01000090
Bacillota
Lactococcus garvieae TB25 [AGQX]
29621
29549
-
Asp
GTC
[ENA]
¡û
>W121016420
AGQY01000137
Bacillota
Lactococcus garvieae LG9 [AGQY]
7167
7095
-
Asp
GTC
[ENA]
¡û
>W121081221
AKFO01000021
Bacillota
Lactococcus garvieae IPLA 31405 [AKFO]
541
469
-
Asp
GTC
[ENA]
¡û
>W1610635192
LITB01000025
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
435
363
-
Asp
GTC
[ENA]
¡û
>W1610856930
LQOE01000130
Bacillota
Lactococcus sp. DD01 [LQOE]
540
468
-
Asp
GTC
[ENA]
¡û
>W1611012253
LXWL01000014
Bacillota
Lactococcus garvieae [LXWL]
42
114
+
Asp
GTC
[ENA]
¡û
>W1710568203
FOTJ01000023
Bacillota
Lactococcus garvieae [FOTJ]
330
402
+
Asp
GTC
[ENA]
¡û
>W1710769765
LITB01000025
Bacillota
Lactococcus cremoris subsp. cremoris [LITB]
435
363
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK