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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480412 (50 seq.)
>W1710921724
LNZX01000011
Alphaproteobacteria
Bartonella henselae [LNZX]
15283
15210
-
Cys
GCA
[ENA]
¡û
>W1710921756
LNZY01000005
Alphaproteobacteria
Bartonella henselae [LNZY]
176296
176369
+
Cys
GCA
[ENA]
¡û
>W1710921814
LNZZ01000022
Alphaproteobacteria
Bartonella henselae [LNZZ]
176297
176370
+
Cys
GCA
[ENA]
¡û
>W1710921841
LOAA01000023
Alphaproteobacteria
Bartonella henselae [LOAA]
503
576
+
Cys
GCA
[ENA]
¡û
>W1710921871
LOAB01000007
Alphaproteobacteria
Bartonella henselae [LOAB]
98055
98128
+
Cys
GCA
[ENA]
¡û
>W1710921926
LOAC01000049
Alphaproteobacteria
Bartonella henselae [LOAC]
229306
229379
+
Cys
GCA
[ENA]
¡û
>W1710921974
LOAD01000042
Alphaproteobacteria
Bartonella henselae [LOAD]
15276
15203
-
Cys
GCA
[ENA]
¡û
>W1710921981
LOAE01000001
Alphaproteobacteria
Bartonella henselae [LOAE]
176388
176461
+
Cys
GCA
[ENA]
¡û
>W1710922021
LOAF01000004
Alphaproteobacteria
Bartonella henselae [LOAF]
15284
15211
-
Cys
GCA
[ENA]
¡û
>W1710922078
LOAG01000024
Alphaproteobacteria
Bartonella henselae [LOAG]
332
405
+
Cys
GCA
[ENA]
¡û
>W1710922096
LOAH01000007
Alphaproteobacteria
Bartonella henselae [LOAH]
229314
229387
+
Cys
GCA
[ENA]
¡û
>W1710922147
LOAI01000015
Alphaproteobacteria
Bartonella henselae [LOAI]
15328
15255
-
Cys
GCA
[ENA]
¡û
>W1711034299
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
977998
977925
-
Cys
GCA
[ENA]
¡û
>W131162083
AQYH01000003
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
93438
93365
-
Cys
GCA
[ENA]
¡û
>W131230389
AUHO01000006
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
393920
393993
+
Cys
GCA
[ENA]
¡û
>W1711385415
MEEE01000224
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
3047
2974
-
Cys
GCA
[ENA]
¡û
>W1711505369
MKVL01000010
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
1040378
1040451
+
Cys
GCA
[ENA]
¡û
>C171099676
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
388226
388299
+
Cys
GCA
-
¡û
>C171099758
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
443201
443274
+
Cys
GCA
-
¡û
>W141009896
AHPH01000007
Alphaproteobacteria
Bartonella quintana JK 19 [AHPH]
55792
55719
-
Cys
GCA
[ENA]
¡û
>W141009932
AHPI01000035
Alphaproteobacteria
Bartonella henselae JK 53 [AHPI]
118406
118333
-
Cys
GCA
[ENA]
¡û
>W141009982
AHPJ01000038
Alphaproteobacteria
Bartonella henselae str. Zeus [AHPJ]
119244
119171
-
Cys
GCA
[ENA]
¡û
>W141010014
AHPK01000002
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
315612
315539
-
Cys
GCA
[ENA]
¡û
>W141010079
AHPL01000010
Alphaproteobacteria
Bartonella koehlerae C-29 [AHPL]
119138
119065
-
Cys
GCA
[ENA]
¡û
>W141038046
ALVF01000047
Alphaproteobacteria
Bartonella birtlesii E7 [ALVF]
4603
4676
+
Cys
GCA
[ENA]
¡û
>WENV181166704
OEIU01001222
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
9050
9123
+
Cys
GCA
[ENA]
¢þ
>WENV181171094
OEIV010144166
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
292
219
-
Cys
GCA
[ENA]
¢þ
>WENV181402437
OFTY01001522
[OFTY] sludge metagenome; sludge
9108
9181
+
Cys
GCA
[ENA]
¢þ
>W141222472
AZZR01000005
Alphaproteobacteria
Bartonella henselae JK 51 [AZZR]
334365
334292
-
Cys
GCA
[ENA]
¡û
>W141222517
AZZS01000008
Alphaproteobacteria
Bartonella henselae JK 50 [AZZS]
128946
128873
-
Cys
GCA
[ENA]
¡û
>W141222540
AZZT01000007
Alphaproteobacteria
Bartonella henselae JK 42 [AZZT]
139659
139586
-
Cys
GCA
[ENA]
¡û
>W141222576
AZZU01000002
Alphaproteobacteria
Bartonella henselae JK 41 [AZZU]
136550
136477
-
Cys
GCA
[ENA]
¡û
>W141246013
CALY02000053
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [CALY]
50090
50017
-
Cys
GCA
[ENA]
¡û
>W141280272
JAGY01000003
Alphaproteobacteria
Bartonella doshiae ATCC 700133 [JAGY]
180403
180476
+
Cys
GCA
[ENA]
¡û
>WENV183741702
PJUG01001796
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
1830
1757
-
Cys
GCA
[ENA]
¢þ
>WENV170553860
CXWK01034890
[CXWK] wastewater metagenome; activated sludge
454
527
+
Cys
GCA
[ENA]
¢þ
>WENV170974105
MTKY01054152
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2480
2407
-
Cys
GCA
[ENA]
¢þ
>C181037909
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
451186
451259
+
Cys
GCA
-
¡û
>C181046393
CP020742
Alphaproteobacteria
Bartonella henselae Houston-I [CP020742]
1196123
1196050
-
Cys
GCA
-
¡û
>C191064553
CP029562
Alphaproteobacteria
Mesorhizobium sp. Pch-S [CP029562]
5376291
5376364
+
Cys
GCA
-
¡û
>W141554715
JHPP01000001
Alphaproteobacteria
Bartonella bacilliformis San Pedro600-02 [JHPP]
206291
206364
+
Cys
GCA
[ENA]
¡û
>W1810273163
PSNV01000004
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
355141
355214
+
Cys
GCA
[ENA]
¡û
>C151101985
HG965802
Alphaproteobacteria
Bartonella henselae BM1374163 [HG965802]
1158533
1158460
-
Cys
GCA
[Ensembl]
¡û
>C151102026
HG969191
Alphaproteobacteria
Bartonella henselae BM1374165 [HG969191]
1244427
1244354
-
Cys
GCA
[Ensembl]
¡û
>C151105186
LN879429
Alphaproteobacteria
Bartonella henselae MVT02 [LN879429]
1158533
1158460
-
Cys
GCA
-
¡û
>W121059161
AILV01000006
Alphaproteobacteria
Bartonella doshiae NCTC 12862 [AILV]
137658
137585
-
Cys
GCA
[ENA]
¡û
>W121059648
AIMH01000035
Alphaproteobacteria
Bartonella vinsonii subsp. arupensis Pm136co [AIMH]
186580
186653
+
Cys
GCA
[ENA]
¡û
>C131002124
CP003124
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Winnie [CP003124]
1114115
1114042
-
Cys
GCA
[Ensembl]
¡û
>W1610882074
LRIJ01000002
Alphaproteobacteria
Bartonella henselae str. Houston-1 [LRIJ]
977998
977925
-
Cys
GCA
[ENA]
¡û
>W1710583194
FQUP01000003
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
471327
471400
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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