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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480451 (96 seq.)
>W1710885345
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
342996
343066
+
Cys
GCA
[ENA]
¡û
>W1711612467
MOWQ01000001
Bacillota
Leuconostoc sp. BM2 [MOWQ]
156040
155970
-
Cys
GCA
[ENA]
¡û
>W1711617394
MPAL01000002
Bacillota
Leuconostoc pseudomesenteroides [MPAL]
90020
90090
+
Cys
GCA
[ENA]
¡û
>W1711617470
MPAM01000027
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAM]
10850
10780
-
Cys
GCA
[ENA]
¡û
>W1711617517
MPAN01000024
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAN]
10850
10780
-
Cys
GCA
[ENA]
¡û
>W1711617566
MPAO01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAO]
10850
10780
-
Cys
GCA
[ENA]
¡û
>W1711617617
MPAP01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAP]
10850
10780
-
Cys
GCA
[ENA]
¡û
>W1711617668
MPAQ01000023
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAQ]
10850
10780
-
Cys
GCA
[ENA]
¡û
>W1711617691
MPAR01000004
Bacillota
Leuconostoc pseudomesenteroides [MPAR]
90020
90090
+
Cys
GCA
[ENA]
¡û
>W1711617767
MPAS01000032
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAS]
7781
7711
-
Cys
GCA
[ENA]
¡û
>W1711617816
MPAT01000023
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAT]
10791
10721
-
Cys
GCA
[ENA]
¡û
>W1711617866
MPAU01000032
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPAU]
7507
7437
-
Cys
GCA
[ENA]
¡û
>W1711618115
MPBA01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBA]
71052
70982
-
Cys
GCA
[ENA]
¡û
>W1711618165
MPBB01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBB]
116068
115998
-
Cys
GCA
[ENA]
¡û
>W1711618213
MPBC01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBC]
58801
58871
+
Cys
GCA
[ENA]
¡û
>W1711618262
MPBD01000001
Bacillota
Leuconostoc pseudomesenteroides [MPBD]
71052
70982
-
Cys
GCA
[ENA]
¡û
>W1711622343
MPEA01000028
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEA]
11780
11850
+
Cys
GCA
[ENA]
¡û
>W1711622398
MPEB01000059
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEB]
10874
10804
-
Cys
GCA
[ENA]
¡û
>W1711622522
MPED01000024
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPED]
10878
10808
-
Cys
GCA
[ENA]
¡û
>W1711622544
MPEE01000003
Bacillota
Leuconostoc pseudomesenteroides [MPEE]
90020
90090
+
Cys
GCA
[ENA]
¡û
>W1711622618
MPEF01000023
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEF]
10791
10721
-
Cys
GCA
[ENA]
¡û
>W1711622668
MPEG01000024
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEG]
10792
10722
-
Cys
GCA
[ENA]
¡û
>W1711622703
MPEH01000025
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEH]
10878
10808
-
Cys
GCA
[ENA]
¡û
>W1711622763
MPEI01000023
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEI]
11026
10956
-
Cys
GCA
[ENA]
¡û
>W1711622818
MPEJ01000025
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPEJ]
10791
10721
-
Cys
GCA
[ENA]
¡û
>W1711624824
MPHN01000005
Bacillota
Leuconostoc pseudomesenteroides [MPHN]
90280
90350
+
Cys
GCA
[ENA]
¡û
>W1711624867
MPHO01000006
Bacillota
Leuconostoc pseudomesenteroides [MPHO]
38691
38621
-
Cys
GCA
[ENA]
¡û
>W1711624928
MPHP01000023
Bacillota
Leuconostoc pseudomesenteroides [MPHP]
12752
12822
+
Cys
GCA
[ENA]
¡û
>W1711624946
MPHQ01000001
Bacillota
Leuconostoc pseudomesenteroides [MPHQ]
71636
71566
-
Cys
GCA
[ENA]
¡û
>W1711625030
MPHR01000110
Bacillota
Leuconostoc pseudomesenteroides [MPHR]
128
58
-
Cys
GCA
[ENA]
¡û
>W1711625072
MPHS01000029
Bacillota
Leuconostoc pseudomesenteroides [MPHS]
14776
14846
+
Cys
GCA
[ENA]
¡û
>W1711625115
MPHT01000008
Bacillota
Leuconostoc pseudomesenteroides [MPHT]
9969
9899
-
Cys
GCA
[ENA]
¡û
>W1711625171
MPHU01000027
Bacillota
Leuconostoc pseudomesenteroides [MPHU]
5102
5172
+
Cys
GCA
[ENA]
¡û
>W1711627083
MPLF01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLF]
156040
155970
-
Cys
GCA
[ENA]
¡û
>W1711627132
MPLG01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLG]
64383
64453
+
Cys
GCA
[ENA]
¡û
>W1711627186
MPLH01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLH]
26150
26220
+
Cys
GCA
[ENA]
¡û
>W1711627270
MPLI01000022
Bacillota
Leuconostoc mesenteroides subsp. cremoris [MPLI]
10791
10721
-
Cys
GCA
[ENA]
¡û
>W1711627290
MPLJ01000003
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLJ]
20515
20585
+
Cys
GCA
[ENA]
¡û
>W1711627336
MPLK01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLK]
64382
64452
+
Cys
GCA
[ENA]
¡û
>W1711627435
MPLM01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLM]
64383
64453
+
Cys
GCA
[ENA]
¡û
>W1711627541
MPLO01000004
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLO]
176078
176008
-
Cys
GCA
[ENA]
¡û
>W1711627587
MPLP01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLP]
176078
176008
-
Cys
GCA
[ENA]
¡û
>W1711627632
MPLQ01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLQ]
53493
53563
+
Cys
GCA
[ENA]
¡û
>W1711627689
MPLR01000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides [MPLR]
48987
49057
+
Cys
GCA
[ENA]
¡û
>W1711627733
MPLS01000001
Bacillota
Leuconostoc pseudomesenteroides [MPLS]
9861
9791
-
Cys
GCA
[ENA]
¡û
>C171019398
CP013016
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides DRC0211 [CP013016]
494980
495050
+
Cys
GCA
-
¡û
>C171032515
CP014611
Bacillota
Leuconostoc mesenteroides subsp. jonggajibkimchii DRC1506 [CP014611]
494773
494843
+
Cys
GCA
-
¡û
>C171037194
CP015247
Bacillota
Leuconostoc suionicum DSM 20241 [CP015247]
493355
493425
+
Cys
GCA
-
¡û
>C171038879
CP015442
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD1710 [CP015442]
526579
526649
+
Cys
GCA
-
¡û
>C171111870
CP020731
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides FM06 [CP020731]
352249
352179
-
Cys
GCA
-
¡û
>C012136
CP000414
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [CP000414]
500070
500140
+
Cys
GCA
[Ensembl]
¡û
>W141075603
ATAZ01000041
Bacillota
Leuconostoc mesenteroides subsp. cremoris TIFN8 [ATAZ]
42481
42411
-
Cys
GCA
[ENA]
¡û
>W141244921
CAKV01000100
Bacillota
Leuconostoc pseudomesenteroides 4882 [CAKV]
15745
15675
-
Cys
GCA
[ENA]
¡û
>W141292104
JAUI01000010
Bacillota
Leuconostoc pseudomesenteroides 1159 [JAUI]
58889
58959
+
Cys
GCA
[ENA]
¡û
>W141292171
JAUJ01000008
Bacillota
Leuconostoc mesenteroides subsp. cremoris T26 [JAUJ]
32092
32162
+
Cys
GCA
[ENA]
¡û
>WENV183511888
OMJG01009318
[OMJG] food metagenome; Cotija cheese
202
272
+
Cys
GCA
[ENA]
¢þ
>W141402104
JDVA01000007
Bacillota
Leuconostoc pseudomesenteroides PS12 [JDVA]
115827
115757
-
Cys
GCA
[ENA]
¡û
>C181003760
AP017935
Bacillota
Leuconostoc suionicum LT-38 [AP017935]
740618
740688
+
Cys
GCA
-
¡û
>C181003823
AP017936
Bacillota
Leuconostoc mesenteroides LK-151 [AP017936]
730347
730417
+
Cys
GCA
-
¡û
>C181054919
CP021966
Bacillota
Leuconostoc mesenteroides CBA7131 [CP021966]
494490
494560
+
Cys
GCA
-
¡û
>C191019098
CP021491
Bacillota
Leuconostoc mesenteroides WiKim33 [CP021491]
645780
645710
-
Cys
GCA
-
¡û
>C191135403
CP035139
Bacillota
Leuconostoc mesenteroides SRCM103356 [CP035139]
494491
494561
+
Cys
GCA
-
¡û
>C191137958
CP035271
Bacillota
Leuconostoc mesenteroides SRCM103453 [CP035271]
494491
494561
+
Cys
GCA
-
¡û
>C191146241
CP035746
Bacillota
Leuconostoc mesenteroides SRCM103460 [CP035746]
494486
494556
+
Cys
GCA
-
¡û
>W09100496
AABH02000017
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 [AABH]
20118
20048
-
Cys
GCA
[ENA]
¡û
>W09127268
ACKV01000076
Bacillota
Leuconostoc mesenteroides subsp. cremoris ATCC 19254 [ACKV]
10665
10595
-
Cys
GCA
[ENA]
¡û
>W1910181164
BJLS01000001
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides NBRC 3832 [BJLS]
98903
98973
+
Cys
GCA
[ENA]
¡û
>C141000447
CP000574
Bacillota
Leuconostoc mesenteroides KFRI-MG [CP000574]
494578
494648
+
Cys
GCA
[Ensembl]
¡û
>W1910810804
MUXD01000001
Bacillota
Leuconostoc mesenteroides YL48 [MUXD]
68988
69058
+
Cys
GCA
[ENA]
¡û
>W1910870949
NCWT01000003
Bacillota
Leuconostoc mesenteroides OG2 [NCWT]
28194
28264
+
Cys
GCA
[ENA]
¡û
>W1911533345
OKQR01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8486 [OKQR]
1007469
1007399
-
Cys
GCA
[ENA]
¡û
>W1911533496
OKQU01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 9216 [OKQU]
1132197
1132127
-
Cys
GCA
[ENA]
¡û
>W1911533618
OKQW01000001
Bacillota
Leuconostoc mesenteroides CECT 9268 [OKQW]
504629
504559
-
Cys
GCA
[ENA]
¡û
>W1911533939
OKRL01000001
Bacillota
Leuconostoc mesenteroides CECT 9217 [OKRL]
346698
346768
+
Cys
GCA
[ENA]
¡û
>W1911538487
OMON01000001
Bacillota
Leuconostoc suionicum subsp. suionicum CECT 8484 [OMON]
1007337
1007267
-
Cys
GCA
[ENA]
¡û
>W1911539176
OMPP01000001
Bacillota
Leuconostoc mesenteroides CECT 9266 [OMPP]
346720
346790
+
Cys
GCA
[ENA]
¡û
>W1810705424
QMJH01000005
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_608 [QMJH]
6346
6276
-
Cys
GCA
[ENA]
¡û
>W1810705487
QMJI01000028
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_609 [QMJI]
6346
6276
-
Cys
GCA
[ENA]
¡û
>W1810705505
QMJJ01000001
Bacillota
Leuconostoc pseudomesenteroides KMB_610 [QMJJ]
165884
165954
+
Cys
GCA
[ENA]
¡û
>W1810705552
QMJK01000007
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides KMB_611 [QMJK]
132260
132330
+
Cys
GCA
[ENA]
¡û
>C151089411
CP012009
Bacillota
Leuconostoc mesenteroides subsp. dextranicum DSM 20484 [CP012009]
1205820
1205890
+
Cys
GCA
[Ensembl]
¡û
>W1510013872
BBPK01000006
Bacillota
Leuconostoc mesenteroides Wikim17 [BBPK]
6332
6262
-
Cys
GCA
[ENA]
¡û
>WENV11100281
AEKF01000009
Food metagenome, Jonggazip commercial cabbage kimchi
79222
79292
+
Cys
GCA
[ENA]
¡û
>W1511346258
JRGZ01000002
Bacillota
Leuconostoc mesenteroides P45 [JRGZ]
357164
357234
+
Cys
GCA
[ENA]
¡û
>W11141997
AEOQ01000426
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
30546
30616
+
Cys
GCA
[ENA]
¡û
>W11142007
AEOQ01000704
Bacillota
Leuconostoc pseudomesenteroides KCTC 3652 [AEOQ]
1861
1931
+
Cys
GCA
[ENA]
¡û
>W1511585382
LAYN01000002
Bacillota
Leuconostoc mesenteroides subsp. dextranicum LbE15 [LAYN]
219476
219406
-
Cys
GCA
[ENA]
¡û
>W1511585693
LAYU01000002
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides LbE16 [LAYU]
162981
162911
-
Cys
GCA
[ENA]
¡û
>W1511585747
LAYV01000001
Bacillota
Leuconostoc mesenteroides subsp. cremoris LbT16 [LAYV]
104631
104561
-
Cys
GCA
[ENA]
¡û
>C121005803
CP003101
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides J18 [CP003101]
494739
494809
+
Cys
GCA
[Ensembl]
¡û
>C161074401
CP014610
Bacillota
Leuconostoc mesenteroides subsp. mesenteroides BD3749 [CP014610]
494605
494675
+
Cys
GCA
-
¡û
>W1610061376
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
227730
227800
+
Cys
GCA
[ENA]
¡û
>W1610061416
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
74419
74489
+
Cys
GCA
[ENA]
¡û
>W1610747271
LMXE01000002
Bacillota
Leuconostoc mesenteroides [LMXE]
342996
343066
+
Cys
GCA
[ENA]
¡û
>W1710059041
BCMO01000001
Bacillota
Leuconostoc mesenteroides [BCMO]
227730
227800
+
Cys
GCA
[ENA]
¡û
>W1710059081
BCMP01000002
Bacillota
Leuconostoc mesenteroides [BCMP]
74419
74489
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK