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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480457 (35 seq.)
>W1711128595
LUSO01000012
Bacillota
Clostridium baratii [LUSO]
711573
711646
+
Cys
GCA
[ENA]
¡û
>W1711342287
MCGV01000001
Bacillota
Clostridium pasteurianum [MCGV]
3827926
3827999
+
Cys
GCA
[ENA]
¡û
>W1711342305
MCGV01000001
Bacillota
Clostridium pasteurianum [MCGV]
1918668
1918595
-
Cys
GCA
[ENA]
¡û
>W1711462132
MJHM01000004
Bacillota
Clostridium baratii [MJHM]
77187
77114
-
Cys
GCA
[ENA]
¡û
>WENV182358329
OIBU01018941
[OIBU] human gut metagenome; feces
568
641
+
Cys
GCA
[ENA]
¢þ
>WENV182631713
OJKW01017817
[OJKW] metagenome; faeces
1938
2011
+
Cys
GCA
[ENA]
¢þ
>WENV183159817
OLOU01014669
[OLOU] human gut metagenome; faeces
1893
1820
-
Cys
GCA
[ENA]
¢þ
>WENV170700137
LIDZ01003260
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
23374
23301
-
Cys
GCA
[ENA]
¢þ
>C181047872
CP020953
Bacillota
Clostridium drakei SL1 [CP020953]
4756876
4756803
-
Cys
GCA
-
¡û
>C181176720
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1148309
1148382
+
Cys
GCA
-
¡û
>C191089280
CP032416
Bacillota
Clostridium fermenticellae JN500901 [CP032416]
73175
73248
+
Cys
GCA
-
¡û
>C191106454
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2111143
2111070
-
Cys
GCA
-
¡û
>W141565577
JIBU02000019
Bacillota
Clostridium drakei [JIBU]
29561
29634
+
Cys
GCA
[ENA]
¡û
>W141569558
JIDX01000045
Bacillota
Clostridium scatologenes [JIDX]
36615
36542
-
Cys
GCA
[ENA]
¡û
>W09135100
ACVI01000089
Bacillota
Clostridium carboxidivorans P7 [ACVI]
18091
18164
+
Cys
GCA
[ENA]
¡û
>W1810085610
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
3827926
3827999
+
Cys
GCA
[ENA]
¡û
>W1810085628
PETE01000002
Bacillota
Clostridium sp. CT7 [PETE]
1918668
1918595
-
Cys
GCA
[ENA]
¡û
>W1810367531
PVXP01000006
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
33488
33415
-
Cys
GCA
[ENA]
¡û
>W1810367571
PVXP01000121
Bacillota
Clostridium luticellarii DSM 29923 [PVXP]
2072
2145
+
Cys
GCA
[ENA]
¡û
>C151014132
CP006903
Bacillota
Clostridium botulinum 202F [CP006903]
2786686
2786759
+
Cys
GCA
[Ensembl]
¡û
>C151062288
CP009933
Bacillota
Clostridium scatologenes ATCC 25775 [CP009933]
5149402
5149475
+
Cys
GCA
[Ensembl]
¡û
>C151086642
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
4684679
4684752
+
Cys
GCA
[Ensembl]
¡û
>C151086691
CP011803
Bacillota
Clostridium carboxidivorans P7 [CP011803]
3932926
3932853
-
Cys
GCA
[Ensembl]
¡û
>W11115433
ADEK01000032
Bacillota
Clostridium carboxidivorans P7 [ADEK]
18100
18173
+
Cys
GCA
[ENA]
¡û
>W1511707458
LGVB01000016
Bacillota
Clostridium sp. DMHC 10 [LGVB]
313253
313180
-
Cys
GCA
[ENA]
¡û
>W121124016
BAEV01000026
Bacillota
Clostridium arbusti SL206 [BAEV]
37318
37245
-
Cys
GCA
[ENA]
¡û
>W121124047
BAEV01000174
Bacillota
Clostridium arbusti SL206 [BAEV]
2836
2763
-
Cys
GCA
[ENA]
¡û
>W1610103127
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
397481
397408
-
Cys
GCA
[ENA]
¡û
>C131002504
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
184944
185017
+
Cys
GCA
[Ensembl]
¡û
>C131002556
CP003261
Bacillota
Clostridium pasteurianum BC1 [CP003261]
3095487
3095414
-
Cys
GCA
[Ensembl]
¡û
>W1610616814
LGRR01000003
Bacillota
Clostridium baratii [LGRR]
591057
590984
-
Cys
GCA
[ENA]
¡û
>W1710105882
CZAV01000001
Bacillota
Clostridium baratii [CZAV]
397481
397408
-
Cys
GCA
[ENA]
¡û
>W1710605740
FWXH01000003
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
60374
60447
+
Cys
GCA
[ENA]
¡û
>W1710605749
FWXH01000016
Bacillota
Clostridium acidisoli DSM 12555 [FWXH]
68454
68381
-
Cys
GCA
[ENA]
¡û
>W1710742153
LGRR01000003
Bacillota
Clostridium baratii [LGRR]
591057
590984
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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