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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480474 (117 seq.)
>W1710879308
LMRO01000012
Actinomycetota
Rhodococcus sp. Leaf233 [LMRO]
149549
149622
+
Gly
CCC
[ENA]
¡û
>W1710879448
LMRR01000044
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
146704
146631
-
Gly
CCC
[ENA]
¡û
>W1711138407
LVCU01000164
Actinomycetota
Rhodococcus sp. EPR-147 [LVCU]
6026
5953
-
Gly
CCC
[ENA]
¡û
>W1711138443
LVCV01000184
Actinomycetota
Rhodococcus sp. EPR-157 [LVCV]
22315
22244
-
Gly
CCC
[ENA]
¡û
>W1711138497
LVCW01000193
Actinomycetota
Rhodococcus sp. EPR-279 [LVCW]
13939
13866
-
Gly
CCC
[ENA]
¡û
>W1711143460
LVHI01000006
Actinomycetota
Rhodococcus kyotonensis [LVHI]
37199
37128
-
Gly
CCC
[ENA]
¡û
>W131180494
ARND01000050
Actinomycetota
Rhodococcus sp. 29MFTsu3.1 [ARND]
68282
68211
-
Gly
CCC
[ENA]
¡û
>W131185196
ARTN01000036
Actinomycetota
Rhodococcus sp. 114MFTsu3.1 [ARTN]
216354
216283
-
Gly
CCC
[ENA]
¡û
>W131244311
CAPS01000012
Actinomycetota
Rhodococcus sp. AW25M09 [CAPS]
2764
2837
+
Gly
CCC
[ENA]
¡û
>W1711492148
MKKD01000052
Actinomycetota
Rhodococcus sp. CUA-806 [MKKD]
7356
7427
+
Gly
CCC
[ENA]
¡û
>W1711492842
MKKX01000032
Actinomycetota
Rhodococcus sp. 1163 [MKKX]
98221
98150
-
Gly
CCC
[ENA]
¡û
>W1711492900
MKKY01000079
Actinomycetota
Rhodococcus sp. 1168 fascians [MKKY]
105379
105452
+
Gly
CCC
[ENA]
¡û
>W141168777
AXVF01000001
Actinomycetota
Rhodococcus sp. JG-3 [AXVF]
1301241
1301168
-
Gly
CCC
[ENA]
¡û
>C191094568
CP032762
Actinomycetota
Rhodococcus sp. P1Y [CP032762]
1301488
1301415
-
Gly
CCC
-
¡û
>C191163926
CP039253
Actinomycetota
Rhodococcus sp. PAMC28707 [CP039253]
1772785
1772856
+
Gly
CCC
-
¡û
>C191164007
CP039254
Actinomycetota
Rhodococcus sp. PAMC28705 [CP039254]
1284371
1284300
-
Gly
CCC
-
¡û
>W1910548922
FZOW01000008
Actinomycetota
Rhodococcus kyotonensis JCM 23211 [FZOW]
93371
93442
+
Gly
CCC
[ENA]
¡û
>W1911137645
NOWH01000022
Actinomycetota
Rhodococcus fascians PBTS 2 [NOWH]
70645
70572
-
Gly
CCC
[ENA]
¡û
>W1911139465
NOXY01000009
Actinomycetota
Rhodococcus sp. WWJCD1 [NOXY]
166429
166502
+
Gly
CCC
[ENA]
¡û
>W1911139513
NOXZ01000014
Actinomycetota
Rhodococcus sp. RS1C4 [NOXZ]
241324
241395
+
Gly
CCC
[ENA]
¡û
>W1911139557
NOYA01000013
Actinomycetota
Rhodococcus sp. 06-621-2 [NOYA]
377162
377233
+
Gly
CCC
[ENA]
¡û
>W1911139613
NOYB01000010
Actinomycetota
Rhodococcus sp. 06-470-2 [NOYB]
164906
164833
-
Gly
CCC
[ENA]
¡û
>W1911139668
NOYC01000010
Actinomycetota
Rhodococcus sp. 06-469-3-2 [NOYC]
156204
156131
-
Gly
CCC
[ENA]
¡û
>W1911139723
NOYD01000014
Actinomycetota
Rhodococcus sp. 06-462-5 [NOYD]
43618
43545
-
Gly
CCC
[ENA]
¡û
>W1911139759
NOYE01000014
Actinomycetota
Rhodococcus sp. 06-418-5 [NOYE]
285398
285471
+
Gly
CCC
[ENA]
¡û
>W1911139829
NOYF01000038
Actinomycetota
Rhodococcus sp. 06-418-1B [NOYF]
65982
65911
-
Gly
CCC
[ENA]
¡û
>W1911139880
NOYG01000028
Actinomycetota
Rhodococcus sp. 06-412-2C [NOYG]
65703
65630
-
Gly
CCC
[ENA]
¡û
>W1911139926
NOYH01000021
Actinomycetota
Rhodococcus sp. 06-412-2B [NOYH]
65689
65616
-
Gly
CCC
[ENA]
¡û
>W1911139946
NOYI01000008
Actinomycetota
Rhodococcus sp. 06-235-1A [NOYI]
148992
149065
+
Gly
CCC
[ENA]
¡û
>W1911140027
NOYJ01000035
Actinomycetota
Rhodococcus sp. 06-221-2 [NOYJ]
512997
513070
+
Gly
CCC
[ENA]
¡û
>W1911140038
NOYK01000011
Actinomycetota
Rhodococcus sp. 06-156-4C [NOYK]
65961
65890
-
Gly
CCC
[ENA]
¡û
>W1911140102
NOYL01000025
Actinomycetota
Rhodococcus sp. 06-156-4a [NOYL]
154051
154122
+
Gly
CCC
[ENA]
¡û
>W1911140171
NOYM01000023
Actinomycetota
Rhodococcus sp. 06-156-3C [NOYM]
34802
34873
+
Gly
CCC
[ENA]
¡û
>W1911140201
NOYN01000021
Actinomycetota
Rhodococcus sp. 06-156-3b [NOYN]
65909
65838
-
Gly
CCC
[ENA]
¡û
>W1911140245
NOYO01000006
Actinomycetota
Rhodococcus sp. 06-156-3 [NOYO]
65998
65927
-
Gly
CCC
[ENA]
¡û
>W1911140283
NOYP01000002
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
86864
86937
+
Gly
CCC
[ENA]
¡û
>W1911140417
NOYQ01000027
Actinomycetota
Rhodococcus sp. 06-1477-1A [NOYQ]
192528
192455
-
Gly
CCC
[ENA]
¡û
>W1911140467
NOYR01000034
Actinomycetota
Rhodococcus sp. 06-1474-1B [NOYR]
443461
443388
-
Gly
CCC
[ENA]
¡û
>W1911140477
NOYS01000019
Actinomycetota
Rhodococcus sp. 06-1460-1B [NOYS]
370381
370454
+
Gly
CCC
[ENA]
¡û
>W1911140562
NOYT01000070
Actinomycetota
Rhodococcus sp. 06-1059B-a [NOYT]
333009
333080
+
Gly
CCC
[ENA]
¡û
>W1911140599
NOYU01000039
Actinomycetota
Rhodococcus sp. 05-340-2 [NOYU]
196308
196235
-
Gly
CCC
[ENA]
¡û
>W1911140641
NOYV01000022
Actinomycetota
Rhodococcus sp. 05-340-1 [NOYV]
115407
115480
+
Gly
CCC
[ENA]
¡û
>W1911140659
NOYW01000004
Actinomycetota
Rhodococcus sp. 05-339-2 [NOYW]
588852
588925
+
Gly
CCC
[ENA]
¡û
>W1911140711
NOYX01000011
Actinomycetota
Rhodococcus sp. 05-2256-B4 [NOYX]
16222
16295
+
Gly
CCC
[ENA]
¡û
>W1911140772
NOYY01000023
Actinomycetota
Rhodococcus sp. 05-2256-B3 [NOYY]
16222
16295
+
Gly
CCC
[ENA]
¡û
>W1911140816
NOYZ01000020
Actinomycetota
Rhodococcus sp. 05-2256-B2 [NOYZ]
187589
187516
-
Gly
CCC
[ENA]
¡û
>W1911140856
NOZA01000015
Actinomycetota
Rhodococcus sp. 05-2256-B1 [NOZA]
464529
464456
-
Gly
CCC
[ENA]
¡û
>W1911140936
NOZB01000061
Actinomycetota
Rhodococcus sp. 05-2255-3C [NOZB]
169148
169221
+
Gly
CCC
[ENA]
¡û
>W1911140957
NOZC01000018
Actinomycetota
Rhodococcus sp. 05-2255-3B1 [NOZC]
155006
154933
-
Gly
CCC
[ENA]
¡û
>W1911141028
NOZD01000053
Actinomycetota
Rhodococcus sp. 05-2255-2A2 [NOZD]
155006
154933
-
Gly
CCC
[ENA]
¡û
>W1911141073
NOZE01000033
Actinomycetota
Rhodococcus sp. 05-2255-1e [NOZE]
156887
156814
-
Gly
CCC
[ENA]
¡û
>W1911141096
NOZF01000114
Actinomycetota
Rhodococcus sp. 05-2254-6 [NOZF]
4170
4097
-
Gly
CCC
[ENA]
¡û
>W1911141160
NOZG01000027
Actinomycetota
Rhodococcus sp. 05-2254-5 [NOZG]
143561
143488
-
Gly
CCC
[ENA]
¡û
>W1911141200
NOZH01000026
Actinomycetota
Rhodococcus sp. 05-2254-4 [NOZH]
19933
19860
-
Gly
CCC
[ENA]
¡û
>W1911141217
NOZI01000003
Actinomycetota
Rhodococcus sp. 05-2254-3 [NOZI]
156996
156923
-
Gly
CCC
[ENA]
¡û
>W1911141267
NOZJ01000004
Actinomycetota
Rhodococcus sp. 05-2254-2 [NOZJ]
19963
19890
-
Gly
CCC
[ENA]
¡û
>W1911141347
NOZK01000030
Actinomycetota
Rhodococcus sp. 05-2254-1 [NOZK]
12647
12720
+
Gly
CCC
[ENA]
¡û
>W1911141382
NOZL01000037
Actinomycetota
Rhodococcus sp. 05-2221-1B [NOZL]
1050979
1051052
+
Gly
CCC
[ENA]
¡û
>W1911141417
NOZM01000005
Actinomycetota
Rhodococcus sp. 02-925g [NOZM]
153853
153780
-
Gly
CCC
[ENA]
¡û
>W1911141457
NOZN01000010
Actinomycetota
Rhodococcus fascians B3 [NOZN]
196440
196513
+
Gly
CCC
[ENA]
¡û
>W1911141503
NOZO01000009
Actinomycetota
Rhodococcus fascians A2 [NOZO]
196434
196507
+
Gly
CCC
[ENA]
¡û
>W1911149001
NPFL01000006
Actinomycetota
Rhodococcus sp. 15-725-2-2b [NPFL]
100233
100306
+
Gly
CCC
[ENA]
¡û
>W1911149050
NPFM01000011
Actinomycetota
Rhodococcus sp. 15-649-2-2 [NPFM]
178120
178193
+
Gly
CCC
[ENA]
¡û
>W1911149097
NPFN01000007
Actinomycetota
Rhodococcus sp. 15-649-1-2 [NPFN]
493438
493509
+
Gly
CCC
[ENA]
¡û
>W1911149144
NPFO01000007
Actinomycetota
Rhodococcus fascians 15-508-1b [NPFO]
391821
391894
+
Gly
CCC
[ENA]
¡û
>W1911149200
NPFP01000013
Actinomycetota
Rhodococcus sp. 15-2388-1-1a [NPFP]
54456
54529
+
Gly
CCC
[ENA]
¡û
>W1911149240
NPFQ01000010
Actinomycetota
Rhodococcus sp. 15-1189-1-1a [NPFQ]
156162
156234
+
Gly
CCC
[ENA]
¡û
>W1911149287
NPFR01000009
Actinomycetota
Rhodococcus sp. 15-1154-1 [NPFR]
273203
273274
+
Gly
CCC
[ENA]
¡û
>W1911149338
NPFS01000010
Actinomycetota
Rhodococcus sp. 14-2686-1-2 [NPFS]
156195
156267
+
Gly
CCC
[ENA]
¡û
>W1911149384
NPFT01000007
Actinomycetota
Rhodococcus fascians 14-2632-D2 [NPFT]
403314
403387
+
Gly
CCC
[ENA]
¡û
>W1911149430
NPFU01000007
Actinomycetota
Rhodococcus fascians 14-2632c-1 [NPFU]
392864
392937
+
Gly
CCC
[ENA]
¡û
>W1911149477
NPFV01000010
Actinomycetota
Rhodococcus sp. 14-2496-1d [NPFV]
107071
107144
+
Gly
CCC
[ENA]
¡û
>W1911149523
NPFW01000007
Actinomycetota
Rhodococcus sp. 14-2483-1-2 [NPFW]
494018
494091
+
Gly
CCC
[ENA]
¡û
>W1911149582
NPFX01000007
Actinomycetota
Rhodococcus sp. 14-2483-1-1 [NPFX]
141774
141847
+
Gly
CCC
[ENA]
¡û
>W1911149631
NPFY01000011
Actinomycetota
Rhodococcus sp. 14-2470-1b [NPFY]
173144
173216
+
Gly
CCC
[ENA]
¡û
>W1911149682
NPFZ01000024
Actinomycetota
Rhodococcus sp. 14-2470-1a [NPFZ]
300031
299959
-
Gly
CCC
[ENA]
¡û
>W1911149726
NPGA01000009
Actinomycetota
Rhodococcus sp. 14-1411-2a [NPGA]
391729
391802
+
Gly
CCC
[ENA]
¡û
>W1911149773
NPGB01000012
Actinomycetota
Rhodococcus sp. 06-156-4 [NPGB]
65934
65863
-
Gly
CCC
[ENA]
¡û
>W1810605759
QGNK01000020
Actinomycetota
Rhodococcus sp. Eu-32 [QGNK]
39864
39935
+
Gly
CCC
[ENA]
¡û
>W1810861449
QTTW01000007
Actinomycetota
Rhodococcus sp. OK269 [QTTW]
302234
302163
-
Gly
CCC
[ENA]
¡û
>SRA1014746
SRR023845.297246
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
80
7
-
Gly
CCC
[SRA]
>C151072344
CP010797
Actinomycetota
Rhodococcus sp. B7740 [CP010797]
3243226
3243299
+
Gly
CCC
[Ensembl]
¡û
>W1511185974
JMEM01000013
Actinomycetota
Rhodococcus fascians LMG 3625 [JMEM]
1546954
1546881
-
Gly
CCC
[ENA]
¡û
>W1511186010
JMEN01000001
Actinomycetota
Rhodococcus fascians NBRC 12155 = LMG 3623 [JMEN]
168066
167993
-
Gly
CCC
[ENA]
¡û
>W1511186097
JMEO01000042
Actinomycetota
Rhodococcus fascians LMG 3616 [JMEO]
16110
16183
+
Gly
CCC
[ENA]
¡û
>W1511186140
JMEP01000024
Actinomycetota
Rhodococcus fascians LMG 3605 [JMEP]
591083
591156
+
Gly
CCC
[ENA]
¡û
>W1511186156
JMEQ01000010
Actinomycetota
Rhodococcus fascians LMG 3602 [JMEQ]
12679
12752
+
Gly
CCC
[ENA]
¡û
>W1511186235
JMER01000027
Actinomycetota
Rhodococcus fascians GIC36 [JMER]
159058
158985
-
Gly
CCC
[ENA]
¡û
>W1511186261
JMES01000031
Actinomycetota
Rhodococcus fascians GIC26 [JMES]
112036
112109
+
Gly
CCC
[ENA]
¡û
>W1511186321
JMET01000025
Actinomycetota
Rhodococcus fascians D188 [JMET]
182746
182819
+
Gly
CCC
[ENA]
¡û
>W1511186367
JMEU01000032
Actinomycetota
Rhodococcus fascians A78 [JMEU]
73660
73587
-
Gly
CCC
[ENA]
¡û
>W1511186424
JMEV01000029
Actinomycetota
Rhodococcus fascians A76 [JMEV]
54425
54498
+
Gly
CCC
[ENA]
¡û
>W1511186426
JMEW01000004
Actinomycetota
Rhodococcus fascians A73a [JMEW]
381434
381507
+
Gly
CCC
[ENA]
¡û
>W1511186505
JMEX01000008
Actinomycetota
Rhodococcus fascians A44A A44a [JMEX]
2171134
2171063
-
Gly
CCC
[ENA]
¡û
>W1511186549
JMEY01000031
Actinomycetota
Rhodococcus fascians A3b [JMEY]
759800
759873
+
Gly
CCC
[ENA]
¡û
>W1511186571
JMEZ01000010
Actinomycetota
Rhodococcus fascians A25f [JMEZ]
572047
572120
+
Gly
CCC
[ENA]
¡û
>W1511186613
JMFA01000001
Actinomycetota
Rhodococcus fascians A21d2 [JMFA]
415972
416045
+
Gly
CCC
[ENA]
¡û
>W1511186705
JMFB01000030
Actinomycetota
Rhodococcus fascians 05-561-1 [JMFB]
154644
154571
-
Gly
CCC
[ENA]
¡û
>W1511186738
JMFC01000019
Actinomycetota
Rhodococcus fascians 05-339-1 [JMFC]
113024
113097
+
Gly
CCC
[ENA]
¡û
>W1511186799
JMFD01000023
Actinomycetota
Rhodococcus fascians 04-516 [JMFD]
186605
186532
-
Gly
CCC
[ENA]
¡û
>W1511186807
JMFE01000007
Actinomycetota
Rhodococcus fascians 02-816c [JMFE]
219889
219960
+
Gly
CCC
[ENA]
¡û
>W1511186856
JMFF01000019
Actinomycetota
Rhodococcus fascians 02-815 [JMFF]
66074
66003
-
Gly
CCC
[ENA]
¡û
>W1511270544
JOKB01000054
Actinomycetota
Rhodococcus fascians A22b [JOKB]
291831
291904
+
Gly
CCC
[ENA]
¡û
>W1511543346
JZIS01000009
Actinomycetota
Rhodococcus sp. PML026 [JZIS]
136925
136852
-
Gly
CCC
[ENA]
¡û
>W1511678799
LFDS01000002
Actinomycetota
Rhodococcus fascians F7 [LFDS]
451279
451352
+
Gly
CCC
[ENA]
¡û
>C161084646
CP015220
Actinomycetota
Rhodococcus fascians PBTS 2 [CP015220]
2034221
2034148
-
Gly
CCC
[Ensembl]
¡û
>C161085281
CP015235
Actinomycetota
Rhodococcus fascians D188 [CP015235]
1438629
1438702
+
Gly
CCC
[Ensembl]
¡û
>W1610041394
BAOX01000362
Actinomycetota
Rhodococcus sp. BS-15 [BAOX]
4258
4331
+
Gly
CCC
[ENA]
¡û
>W1610741654
LMRO01000012
Actinomycetota
Rhodococcus sp. Leaf233 [LMRO]
149549
149622
+
Gly
CCC
[ENA]
¡û
>W1610741794
LMRR01000044
Actinomycetota
Rhodococcus sp. Leaf278 [LMRR]
146704
146631
-
Gly
CCC
[ENA]
¡û
>W1610949447
LVCU01000164
Actinomycetota
Rhodococcus sp. EPR-147 [LVCU]
6026
5953
-
Gly
CCC
[ENA]
¡û
>W1610949483
LVCV01000184
Actinomycetota
Rhodococcus sp. EPR-157 [LVCV]
22315
22244
-
Gly
CCC
[ENA]
¡û
>W1610949537
LVCW01000193
Actinomycetota
Rhodococcus sp. EPR-279 [LVCW]
13939
13866
-
Gly
CCC
[ENA]
¡û
>W1610954468
LVHI01000006
Actinomycetota
Rhodococcus kyotonensis [LVHI]
37199
37128
-
Gly
CCC
[ENA]
¡û
>W1710038557
BAOX01000362
Actinomycetota
Rhodococcus sp. BS-15 [BAOX]
4258
4331
+
Gly
CCC
[ENA]
¡û
>W1710071779
BCWW01000002
Actinomycetota
Rhodococcus fascians NBRC 12155 = LMG 3623 [BCWW]
167914
167841
-
Gly
CCC
[ENA]
¡û
>W1710072353
BCXH01000016
Actinomycetota
Rhodococcus yunnanensis NBRC 103083 [BCXH]
115421
115492
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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