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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480500 (73 seq.)
>W1711115568
LUAH01000032
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
70675
70746
+
Cys
GCA
[ENA]
¡û
>W131205420
ATDL01000005
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
29617
29688
+
Cys
GCA
[ENA]
¡û
>W1711506313
MKWH01000037
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
121010
121081
+
Cys
GCA
[ENA]
¡û
>W1711712780
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
280991
281062
+
Cys
GCA
[ENA]
¡û
>C171089519
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5646506
5646577
+
Cys
GCA
-
¡û
>C171118455
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
5359863
5359934
+
Cys
GCA
-
¡û
>W141075053
ASZT01000299
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
27426
27497
+
Cys
GCA
[ENA]
¡û
>WENV183726706
PJTO01000083
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
25967
26038
+
Cys
GCA
[ENA]
¢þ
>WENV183727709
PJTP01000097
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
25967
26038
+
Cys
GCA
[ENA]
¢þ
>WENV183728893
PJTQ01001047
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
5272
5343
+
Cys
GCA
[ENA]
¢þ
>WENV183729837
PJTR01000109
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
53503
53574
+
Cys
GCA
[ENA]
¢þ
>WENV183730268
PJTR01010323
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
80
9
-
Cys
GCA
[ENA]
¢þ
>WENV183730689
PJTS01000346
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
9684
9755
+
Cys
GCA
[ENA]
¢þ
>WENV183730839
PJTS01001265
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
7491
7420
-
Cys
GCA
[ENA]
¢þ
>WENV183731753
PJTT01000155
[PJTT] soil metagenome; Soil (2) enriched on wood chips
53503
53574
+
Cys
GCA
[ENA]
¢þ
>WENV183732327
PJTX01000016
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
109452
109523
+
Cys
GCA
[ENA]
¢þ
>WENV183732507
PJTX01001240
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1548
1619
+
Cys
GCA
[ENA]
¢þ
>WENV183732627
PJTX01004058
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
2123
2052
-
Cys
GCA
[ENA]
¢þ
>WENV183732946
PJTY01000005
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
8939
8868
-
Cys
GCA
[ENA]
¢þ
>WENV183734023
PJTZ01000021
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
277030
277101
+
Cys
GCA
[ENA]
¢þ
>WENV183734062
PJTZ01000035
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
97262
97333
+
Cys
GCA
[ENA]
¢þ
>WENV183734087
PJTZ01000046
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
80882
80953
+
Cys
GCA
[ENA]
¢þ
>WENV183735101
PJUA01000965
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
10
81
+
Cys
GCA
[ENA]
¢þ
>WENV183735172
PJUA01001785
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4175
4246
+
Cys
GCA
[ENA]
¢þ
>WENV183735190
PJUA01002247
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3339
3410
+
Cys
GCA
[ENA]
¢þ
>WENV183735331
PJUA01012734
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
475
404
-
Cys
GCA
[ENA]
¢þ
>WENV183735685
PJUB01000549
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
3339
3410
+
Cys
GCA
[ENA]
¢þ
>WENV183736279
PJUC01000380
[PJUC] soil metagenome; Soil enriched on filter paper
7888
7959
+
Cys
GCA
[ENA]
¢þ
>WENV183736630
PJUC01027046
[PJUC] soil metagenome; Soil enriched on filter paper
3
74
+
Cys
GCA
[ENA]
¢þ
>WENV183737332
PJUD01003869
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4265
4336
+
Cys
GCA
[ENA]
¢þ
>WENV183737376
PJUD01005215
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3588
3659
+
Cys
GCA
[ENA]
¢þ
>WENV183739168
PJUE01002565
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4241
4312
+
Cys
GCA
[ENA]
¢þ
>WENV183739198
PJUE01002986
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
3588
3659
+
Cys
GCA
[ENA]
¢þ
>WENV183740338
PJUF01001244
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1320
1391
+
Cys
GCA
[ENA]
¢þ
>WENV183740630
PJUF01004693
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
491
562
+
Cys
GCA
[ENA]
¢þ
>WENV183741213
PJUF01057962
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
345
416
+
Cys
GCA
[ENA]
¢þ
>WENV183741500
PJUG01000031
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
108432
108361
-
Cys
GCA
[ENA]
¢þ
>WENV183741981
PJUH01000024
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
108432
108361
-
Cys
GCA
[ENA]
¢þ
>WENV183742664
PJUI01000051
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
108432
108361
-
Cys
GCA
[ENA]
¢þ
>WENV183743153
PJUJ01000066
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
6806
6877
+
Cys
GCA
[ENA]
¢þ
>WENV183743897
PJUK01000030
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
108432
108361
-
Cys
GCA
[ENA]
¢þ
>C181225998
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
1391393
1391322
-
Cys
GCA
-
¡û
>C191157557
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
1222976
1222905
-
Cys
GCA
-
¡û
>C191158049
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
2662944
2662873
-
Cys
GCA
-
¡û
>C191221574
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
1624347
1624276
-
Cys
GCA
-
¡û
>C191222329
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
2878794
2878723
-
Cys
GCA
-
¡û
>W141701977
JMLD01000015
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
92685
92756
+
Cys
GCA
[ENA]
¡û
>W09123583
ACHA01000091
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
23890
23819
-
Cys
GCA
[ENA]
¡û
>W09123620
ACHB01000051
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
24009
23938
-
Cys
GCA
[ENA]
¡û
>W1910377934
FUKU01000030
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
191455
191526
+
Cys
GCA
[ENA]
¡û
>W1910378066
FUKX01000032
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
160183
160112
-
Cys
GCA
[ENA]
¡û
>W1910664353
MCAQ01000003
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
117376
117305
-
Cys
GCA
[ENA]
¡û
>W1911136233
NOUX01000009
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
178255
178184
-
Cys
GCA
[ENA]
¡û
>W1911136257
NOUY01000003
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
188367
188296
-
Cys
GCA
[ENA]
¡û
>W1810002578
BEYR01000008
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
9537
9608
+
Cys
GCA
[ENA]
¡û
>W1810069055
PEAZ01000113
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
2044
2115
+
Cys
GCA
[ENA]
¡û
>W1810069103
PEBA01000064
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
111032
110961
-
Cys
GCA
[ENA]
¡û
>W1810346469
PVBQ01000003
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
77409
77338
-
Cys
GCA
[ENA]
¡û
>W1810346576
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
1902708
1902779
+
Cys
GCA
[ENA]
¡û
>W1810503661
QBKH01000003
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
254511
254440
-
Cys
GCA
[ENA]
¡û
>W1810531952
QCXX01000010
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
161116
161045
-
Cys
GCA
[ENA]
¡û
>W1810543376
QDKG01000005
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
36367
36438
+
Cys
GCA
[ENA]
¡û
>W1810564192
QEAS01000003
Bacteroidota
Pararcticibacter amylolyticus FJ4-8 [QEAS]
81679
81750
+
Cys
GCA
[ENA]
¡û
>C151047360
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
3869719
3869790
+
Cys
GCA
[Ensembl]
¡û
>W1511108324
JJMU01000047
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
54800
54729
-
Cys
GCA
[ENA]
¡û
>W1511352486
JROE01000005
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
328559
328488
-
Cys
GCA
[ENA]
¡û
>W1511590232
LBGU01000016
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
24231
24160
-
Cys
GCA
[ENA]
¡û
>C161077177
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
2574777
2574706
-
Cys
GCA
[Ensembl]
¡û
>W1610867532
LQXS01000001
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
264310
264239
-
Cys
GCA
[ENA]
¡û
>W1710521451
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
111581
111510
-
Cys
GCA
[ENA]
¡û
>W1710538719
FNUT01000015
Bacteroidota
Sphingobacterium lactis [FNUT]
85652
85581
-
Cys
GCA
[ENA]
¡û
>W1710603650
FUZF01000019
Bacteroidota
Sphingobacterium nematocida [FUZF]
19495
19566
+
Cys
GCA
[ENA]
¡û
>W1710608359
FXAU01000006
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
133668
133597
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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