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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480504 (69 seq.)
>W1710863124
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
200763
200688
-
Lys
TTT
[ENA]
¡û
>W1710863132
LMEW01000023
Betaproteobacteria
Massilia sp. Root133 [LMEW]
442516
442441
-
Lys
TTT
[ENA]
¡û
>W1710863133
LMEW01000023
Betaproteobacteria
Massilia sp. Root133 [LMEW]
435732
435657
-
Lys
TTT
[ENA]
¡û
>W1710863155
LMEW01000035
Betaproteobacteria
Massilia sp. Root133 [LMEW]
3274
3199
-
Lys
TTT
[ENA]
¡û
>W131219565
ATYR01000007
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
163372
163297
-
Lys
TTT
[ENA]
¡û
>W131219566
ATYR01000007
Betaproteobacteria
Massilia alkalitolerans DSM 17462 [ATYR]
154810
154735
-
Lys
TTT
[ENA]
¡û
>W1711326634
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
518808
518733
-
Lys
TTT
[ENA]
¡û
>W1711326635
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
518208
518133
-
Lys
TTT
[ENA]
¡û
>W1711767630
MVAD01000001
Betaproteobacteria
Massilia sp. KIM [MVAD]
2337798
2337873
+
Lys
TTT
[ENA]
¡û
>W1711767650
MVAD01000002
Betaproteobacteria
Massilia sp. KIM [MVAD]
835316
835241
-
Lys
TTT
[ENA]
¡û
>W1711767651
MVAD01000002
Betaproteobacteria
Massilia sp. KIM [MVAD]
833448
833373
-
Lys
TTT
[ENA]
¡û
>C171085196
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
1734711
1734636
-
Lys
TTT
-
¡û
>C171088473
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
2760758
2760833
+
Lys
TTT
-
¡û
>C171088474
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
2762894
2762969
+
Lys
TTT
-
¡û
>C171088475
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
2770595
2770670
+
Lys
TTT
-
¡û
>C171088512
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
5989360
5989285
-
Lys
TTT
-
¡û
>WENV180027996
FTIZ01446690
[FTIZ] metagenome; soil
74
1
-
Lys
TTT
[ENA]
¢þ
>WENV180296862
OBJA01003943
[OBJA] soil metagenome; sediment, water from around vicinity
5779
5704
-
Lys
TTT
[ENA]
¢þ
>WENV183726559
PJTO01000011
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
207967
208042
+
Lys
TTT
[ENA]
¢þ
>WENV183726636
PJTO01000044
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
137205
137130
-
Lys
TTT
[ENA]
¢þ
>WENV183726637
PJTO01000044
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
128585
128510
-
Lys
TTT
[ENA]
¢þ
>WENV183728334
PJTQ01000019
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
207967
208042
+
Lys
TTT
[ENA]
¢þ
>WENV183728470
PJTQ01000064
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
137205
137130
-
Lys
TTT
[ENA]
¢þ
>WENV183728471
PJTQ01000064
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
128585
128510
-
Lys
TTT
[ENA]
¢þ
>WENV183733391
PJTY01001557
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
6187
6112
-
Lys
TTT
[ENA]
¢þ
>WENV183734528
PJTZ01015627
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
537
612
+
Lys
TTT
[ENA]
¢þ
>WENV183737251
PJUD01001896
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
3096
3171
+
Lys
TTT
[ENA]
¢þ
>WENV183737263
PJUD01002263
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
4333
4408
+
Lys
TTT
[ENA]
¢þ
>WENV183737275
PJUD01002504
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
114
39
-
Lys
TTT
[ENA]
¢þ
>WENV183737281
PJUD01002696
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
10
85
+
Lys
TTT
[ENA]
¢þ
>WENV183738360
PJUD01176568
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
343
268
-
Lys
TTT
[ENA]
¢þ
>WENV183739050
PJUE01001231
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
8461
8386
-
Lys
TTT
[ENA]
¢þ
>WENV183740349
PJUF01001309
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
11825
11900
+
Lys
TTT
[ENA]
¢þ
>WENV183740443
PJUF01002222
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
210
285
+
Lys
TTT
[ENA]
¢þ
>WENV183740530
PJUF01003135
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
364
439
+
Lys
TTT
[ENA]
¢þ
>WENV170575010
FLYN01023325
[FLYN] hot springs metagenome; Sediment
859
784
-
Lys
TTT
[ENA]
¢þ
>WENV170575267
FLYN01052020
[FLYN] hot springs metagenome; Sediment
832
907
+
Lys
TTT
[ENA]
¢þ
>WENV170650073
JRYD01009239
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
240
315
+
Lys
TTT
[ENA]
¢þ
>WENV170652592
JRYH01007676
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
11171
11246
+
Lys
TTT
[ENA]
¢þ
>WENV170652707
JRYH01017142
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
5186
5261
+
Lys
TTT
[ENA]
¢þ
>WENV170653100
JRYI01003350
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
5162
5237
+
Lys
TTT
[ENA]
¢þ
>WENV170656005
JTFN01114620
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
6
81
+
Lys
TTT
[ENA]
¢þ
>WENV170710311
LNFM01001511
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3578
3503
-
Lys
TTT
[ENA]
¢þ
>W141739264
JNNN01000066
Betaproteobacteria
Massilia sp. LC238 [JNNN]
157488
157413
-
Lys
TTT
[ENA]
¡û
>W141739265
JNNN01000066
Betaproteobacteria
Massilia sp. LC238 [JNNN]
156649
156574
-
Lys
TTT
[ENA]
¡û
>W141739273
JNNN01000078
Betaproteobacteria
Massilia sp. LC238 [JNNN]
348518
348443
-
Lys
TTT
[ENA]
¡û
>W141811274
JPXI01000010
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
129210
129285
+
Lys
TTT
[ENA]
¡û
>W141811275
JPXI01000010
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
137473
137548
+
Lys
TTT
[ENA]
¡û
>W141811281
JPXI01000018
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
29157
29232
+
Lys
TTT
[ENA]
¡û
>W1810330112
PUIP01000002
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
750
825
+
Lys
TTT
[ENA]
¡û
>W1810330127
PUIP01000007
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
327782
327857
+
Lys
TTT
[ENA]
¡û
>W1810444914
PZKC01000009
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
162250
162325
+
Lys
TTT
[ENA]
¡û
>W1511310203
JPQD01000028
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
60028
59953
-
Lys
TTT
[ENA]
¡û
>W1511310204
JPQD01000029
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
5815
5890
+
Lys
TTT
[ENA]
¡û
>W1511310231
JPQD01000179
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
510
435
-
Lys
TTT
[ENA]
¡û
>W1511310232
JPQD01000179
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
122
47
-
Lys
TTT
[ENA]
¡û
>W1511657406
LELH02000006
Betaproteobacteria
Massilia sp. WF1 [LELH]
37491
37566
+
Lys
TTT
[ENA]
¡û
>C161043220
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
2128709
2128634
-
Lys
TTT
-
¡û
>W1610725470
LMEW01000012
Betaproteobacteria
Massilia sp. Root133 [LMEW]
200763
200688
-
Lys
TTT
[ENA]
¡û
>W1610725478
LMEW01000023
Betaproteobacteria
Massilia sp. Root133 [LMEW]
442516
442441
-
Lys
TTT
[ENA]
¡û
>W1610725479
LMEW01000023
Betaproteobacteria
Massilia sp. Root133 [LMEW]
435732
435657
-
Lys
TTT
[ENA]
¡û
>W1610725501
LMEW01000035
Betaproteobacteria
Massilia sp. Root133 [LMEW]
3274
3199
-
Lys
TTT
[ENA]
¡û
>W1611063370
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
518808
518733
-
Lys
TTT
[ENA]
¡û
>W1611063371
MBFM01000005
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
518208
518133
-
Lys
TTT
[ENA]
¡û
>W1710512800
FMZS01000001
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
456294
456369
+
Lys
TTT
[ENA]
¡û
>W1710512801
FMZS01000001
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
456682
456757
+
Lys
TTT
[ENA]
¡û
>W1710512802
FMZS01000001
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
479471
479546
+
Lys
TTT
[ENA]
¡û
>W1710512810
FMZS01000002
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
631704
631629
-
Lys
TTT
[ENA]
¡û
>W1710539461
FNVJ01000013
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
15656
15581
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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