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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480548 (36 seq.)
>W1710777856
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1186334
1186261
-
Cys
GCA
[ENA]
¡û
>W1711227869
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
37034
37107
+
Cys
GCA
[ENA]
¡û
>C171131068
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2211911
2211984
+
Cys
GCA
-
¡û
>C015810
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1749931
1750004
+
Cys
GCA
[Ensembl]
¡û
>C015972
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1969140
1969213
+
Cys
GCA
[Ensembl]
¡û
>w003228
AADI01000005
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
76431
76504
+
Cys
GCA
[ENA]
¡û
>WENV180359521
OBNS01001150
[OBNS] marine metagenome; Seawater
1254
1181
-
Cys
GCA
[ENA]
¢þ
>WENV180375584
OBOL01027851
[OBOL] marine metagenome; Surface water
343
270
-
Cys
GCA
[ENA]
¢þ
>WENV180385250
OBOZ01034134
[OBOZ] marine metagenome; Sea Water
381
308
-
Cys
GCA
[ENA]
¢þ
>WENV180838851
ODKH01000002
[ODKH] human metagenome; G_DNA_Anterior nares
273225
273298
+
Cys
GCA
[ENA]
¢þ
>WENV180937570
ODTW01014851
[ODTW] human metagenome; G_DNA_Anterior nares
82
155
+
Cys
GCA
[ENA]
¢þ
>C08007207
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1749931
1750004
+
Cys
GCA
[Ensembl]
¡û
>W141234066
BAWI01000023
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
4130
4203
+
Cys
GCA
[ENA]
¡û
>W141234108
BAWJ01000018
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
58842
58915
+
Cys
GCA
[ENA]
¡û
>WENV170117771
CENJ01028776
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1050
1123
+
Cys
GCA
[ENA]
¢þ
>WENV170387296
CETY01389131
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
489
562
+
Cys
GCA
[ENA]
¢þ
>WENV170531582
CEWK01158635
[CEWK] marine metagenome genome assembly TARA_132_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
318
245
-
Cys
GCA
[ENA]
¢þ
>WENV170565141
FAOX01003119
[FAOX] marine metagenome; seawater
203
130
-
Cys
GCA
[ENA]
¢þ
>WENV170822230
MDSY01036653
[MDSY] marine metagenome; seawater
1600
1673
+
Cys
GCA
[ENA]
¢þ
>WENV170826589
MDSY01113151
[MDSY] marine metagenome; seawater
649
576
-
Cys
GCA
[ENA]
¢þ
>WENV170860140
MDTB01046637
[MDTB] marine metagenome; seawater
13899
13826
-
Cys
GCA
[ENA]
¢þ
>C181056022
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
666564
666637
+
Cys
GCA
-
¡û
>W09103322
AAJC01000016
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
28424
28351
-
Cys
GCA
[ENA]
¡û
>W1910891762
NEXU01000010
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
21548
21475
-
Cys
GCA
[ENA]
¡û
>W1810157362
PJBX01000123
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
28036
28109
+
Cys
GCA
[ENA]
¡û
>W1810596390
QGGM01000003
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
188406
188479
+
Cys
GCA
[ENA]
¡û
>W1511354245
JRQD01000002
Gammaproteobacteria
Methylophaga thiooxydans [JRQD]
430777
430850
+
Cys
GCA
[ENA]
¡û
>WENV043113
AACY022292334
Marine microbial communities from Global Ocean Sampling (GOS)
771
846
+
Cys
GCA
[ENA]
>C161032120
CP011158
Gammaproteobacteria
Moraxella ovis 199/55 [CP011158]
1268629
1268702
+
Cys
GCA
[Ensembl]
¡û
>W1610112414
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
122510
122583
+
Cys
GCA
[ENA]
¡û
>C131017382
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1948257
1948330
+
Cys
GCA
[Ensembl]
¡û
>W1610632731
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
468163
468236
+
Cys
GCA
[ENA]
¡û
>W1610642042
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
1186334
1186261
-
Cys
GCA
[ENA]
¡û
>W1611011833
LXWA01000031
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
37034
37107
+
Cys
GCA
[ENA]
¡û
>W1710115118
CZJV02000110
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
122510
122583
+
Cys
GCA
[ENA]
¡û
>W1710767163
LIQB01000003
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
468163
468236
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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