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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480747 (43 seq.)
>W131045599
AMRO01000035
Bacillota
Parageobacillus caldoxylosilyticus CIC9 [AMRO]
142559
142489
-
Cys
GCA
[ENA]
¡û
>W1711020642
LQYS01000117
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
525
595
+
Cys
GCA
[ENA]
¡û
>W1711020771
LQYU01000030
Bacillota
Anoxybacillus flavithermus [LQYU]
14262
14192
-
Cys
GCA
[ENA]
¡û
>W1711020972
LQYW01000157
Bacillota
Parageobacillus toebii [LQYW]
4615
4542
-
Cys
GCA
[ENA]
¡û
>W1711116937
LUCT01000029
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
650
720
+
Cys
GCA
[ENA]
¡û
>W1711216355
LXMA01000014
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
721
791
+
Cys
GCA
[ENA]
¡û
>W1711926509
NADP01000161
Bacillota
Geobacillus sp. 44B [NADP]
2516
2446
-
Cys
GCA
[ENA]
¡û
>W1711926552
NADQ01000023
Bacillota
Geobacillus sp. 44C [NADQ]
39789
39716
-
Cys
GCA
[ENA]
¡û
>C171050293
CP016622
Bacillota
Parageobacillus thermoglucosidasius NCIMB 11955 [CP016622]
3128010
3127940
-
Cys
GCA
-
¡û
>C171053497
CP016916
Bacillota
Parageobacillus thermoglucosidasius TM242 [CP016916]
3127421
3127351
-
Cys
GCA
-
¡û
>W141056195
AOTZ01000006
Bacillota
Parageobacillus genomosp. 1 NUB3621 [AOTZ]
107380
107307
-
Cys
GCA
[ENA]
¡û
>W141234512
BAWO01000080
Bacillota
Parageobacillus caldoxylosilyticus NBRC 107762 [BAWO]
14581
14511
-
Cys
GCA
[ENA]
¡û
>W141234543
BAWP01000043
Bacillota
Parageobacillus thermoglucosidasius NBRC 107763 [BAWP]
14051
13981
-
Cys
GCA
[ENA]
¡û
>WENV183675773
ORJL011547564
[ORJL] groundwater metagenome; groundwater
548
621
+
Cys
GCA
[ENA]
¢þ
>WENV170604997
FUWD010440757
[FUWD] metagenome; unknown
705
778
+
Cys
GCA
[ENA]
¢þ
>C181109242
CP024955
Bacillota
Kyrpidia spormannii EA-1 [CP024955]
1324200
1324273
+
Cys
GCA
-
¡û
>W09135266
ACVM01000054
Bacillota
Geobacillus sp. Y4.1MC1 [ACVM]
652
722
+
Cys
GCA
[ENA]
¡û
>W1910129771
BHZK01000001
Bacillota
Parageobacillus thermoglucosidasius TG4 [BHZK]
1213914
1213984
+
Cys
GCA
[ENA]
¡û
>C09106529
CP001638
Bacillota
Geobacillus sp. WCH70 [CP001638]
2142885
2142812
-
Cys
GCA
[Ensembl]
¡û
>W1910874499
NDYL01000002
Bacillota
Parageobacillus galactosidasius DSM 18751 [NDYL]
713281
713208
-
Cys
GCA
[ENA]
¡û
>W1911411783
NWUZ01000001
Bacillota
Parageobacillus yumthangensis AYN2 [NWUZ]
2901708
2901778
+
Cys
GCA
[ENA]
¡û
>W1810530316
QCWL01000001
Bacillota
Geobacillus sp. LYN3 [QCWL]
2804968
2805038
+
Cys
GCA
[ENA]
¡û
>W1810779484
QQOJ01000001
Bacillota
Parageobacillus thermoglucosidasius DSM 2543 [QQOJ]
493033
492963
-
Cys
GCA
[ENA]
¡û
>W1810779635
QQOK01000008
Bacillota
Parageobacillus thermoglucosidasius DSM 6285 [QQOK]
458390
458320
-
Cys
GCA
[ENA]
¡û
>W1810779710
QQOL01000015
Bacillota
Parageobacillus thermoglucosidasius DSM 21625 [QQOL]
473522
473452
-
Cys
GCA
[ENA]
¡û
>W1810789111
QREZ01000095
Bacillota
Parageobacillus toebii PW12 [QREZ]
987
1057
+
Cys
GCA
[ENA]
¡û
>SRA1034374
SRR035089.71970
454 Sequencing (SRP001810)
169
96
-
Cys
GCA
[SRA]
>SRA1048962
SRR035094.297936
454 Sequencing (SRP001815)
215
142
-
Cys
GCA
[SRA]
>W10116211
ADNQ01000003
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [ADNQ]
285410
285340
-
Cys
GCA
[ENA]
¡û
>C11109737
CP002293
Bacillota
Geobacillus sp. Y4.1MC1 [CP002293]
1386483
1386553
+
Cys
GCA
[Ensembl]
¡û
>C11109826
CP002835
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [CP002835]
1449161
1449231
+
Cys
GCA
[Ensembl]
¡û
>W11120880
ADNQ01000003
Bacillota
Parageobacillus thermoglucosidasius C56-YS93 [ADNQ]
285410
285340
-
Cys
GCA
[ENA]
¡û
>W1511523265
JYCE01000053
Bacillota
Bacillus alveayuensis 24KAM51 [JYCE]
93312
93385
+
Cys
GCA
[ENA]
¡û
>W1511570705
LAKX01000046
Bacillota
Parageobacillus thermoglucosidasius DSM 2542 [LAKX]
14175
14105
-
Cys
GCA
[ENA]
¡û
>W121062588
AJJN01000006
Bacillota
Parageobacillus thermoglucosidasius TNO-09.020 [AJJN]
1207
1277
+
Cys
GCA
[ENA]
¡û
>W1610078133
BDAQ01000030
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
7240
7167
-
Cys
GCA
[ENA]
¡û
>W1610868930
LQYS01000117
Bacillota
Parageobacillus caldoxylosilyticus [LQYS]
525
595
+
Cys
GCA
[ENA]
¡û
>W1610869059
LQYU01000030
Bacillota
Anoxybacillus flavithermus [LQYU]
14262
14192
-
Cys
GCA
[ENA]
¡û
>W1610869260
LQYW01000157
Bacillota
Parageobacillus toebii [LQYW]
4615
4542
-
Cys
GCA
[ENA]
¡û
>W1610928296
LUCT01000029
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LUCT]
650
720
+
Cys
GCA
[ENA]
¡û
>W1611001263
LXMA01000014
Bacillota
Parageobacillus thermoglucosidasius thermoglucosidans [LXMA]
721
791
+
Cys
GCA
[ENA]
¡û
>W1710076692
BDAQ01000030
Bacillota
Parageobacillus toebii NBRC 107807 [BDAQ]
7240
7167
-
Cys
GCA
[ENA]
¡û
>W1710555738
FOJS01000033
Bacillota
Parageobacillus thermantarcticus [FOJS]
81
151
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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