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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480761 (128 seq.)
>W1711008581
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
205191
205264
+
Cys
GCA
[ENA]
¡û
>W1711009418
LQQR01000023
Actinomycetota
Brevibacterium casei [LQQR]
23198
23269
+
Cys
GCA
[ENA]
¡û
>W131110246
APJM01000024
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
12168
12239
+
Cys
GCA
[ENA]
¡û
>W1711187188
LWOW01000018
Actinomycetota
Brevibacterium sp. HMSC22B09 [LWOW]
31398
31471
+
Cys
GCA
[ENA]
¡û
>W131218500
ATXU01000002
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
337712
337783
+
Cys
GCA
[ENA]
¡û
>WENV180103114
OAPA01002296
[OAPA] marine metagenome; ENVO:00002010
1124
1053
-
Cys
GCA
[ENA]
¢þ
>WENV180104095
OAPB01080377
[OAPB] marine metagenome; Sterile flask
22
93
+
Cys
GCA
[ENA]
¢þ
>WENV180114475
OAPS01011269
[OAPS] marine metagenome; sea water
553
482
-
Cys
GCA
[ENA]
¢þ
>WENV180209192
OBAK01034933
[OBAK] marine metagenome; ENVO.00002150
298
369
+
Cys
GCA
[ENA]
¢þ
>WENV180359315
OBNR01041677
[OBNR] marine metagenome; Seawater_00002010_00002149
211
282
+
Cys
GCA
[ENA]
¢þ
>WENV180391876
OBPN01080707
[OBPN] marine metagenome; seawater
108
179
+
Cys
GCA
[ENA]
¢þ
>WENV180394370
OBPS01002579
[OBPS] marine metagenome; ENVO:00002010 seawater
2184
2113
-
Cys
GCA
[ENA]
¢þ
>WENV181126299
OEFV01037241
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
272
343
+
Cys
GCA
[ENA]
¢þ
>WENV181403026
OFTZ01014335
[OFTZ] marine metagenome; seawater
95
166
+
Cys
GCA
[ENA]
¢þ
>W141243102
CAJD01000015
Actinomycetota
Brevibacterium ravenspurgense 5401308 [CAJD]
240256
240183
-
Cys
GCA
[ENA]
¡û
>WENV182540378
OJAJ01000009
[OJAJ] seawater metagenome; Sea water
11310
11239
-
Cys
GCA
[ENA]
¢þ
>WENV182540815
OJAQ01000007
[OJAQ] seawater metagenome; Sea water
34251
34322
+
Cys
GCA
[ENA]
¢þ
>WENV182542236
OJAV01015832
[OJAV] seawater metagenome; Sea water
398
327
-
Cys
GCA
[ENA]
¢þ
>WENV182542941
OJAZ01009009
[OJAZ] seawater metagenome; Sea water
1229
1300
+
Cys
GCA
[ENA]
¢þ
>WENV182553154
OJCR01000158
[OJCR] seawater metagenome; Sea water
34996
35067
+
Cys
GCA
[ENA]
¢þ
>WENV182554222
OJCT01022449
[OJCT] seawater metagenome; Sea water
235
164
-
Cys
GCA
[ENA]
¢þ
>WENV182561559
OJDX01000001
[OJDX] seawater metagenome; Sea water
117990
117919
-
Cys
GCA
[ENA]
¢þ
>WENV182561897
OJDY01000001
[OJDY] seawater metagenome; Sea water
122159
122088
-
Cys
GCA
[ENA]
¢þ
>WENV182562725
OJEA01000436
[OJEA] seawater metagenome; Sea water
5376
5305
-
Cys
GCA
[ENA]
¢þ
>WENV182563028
OJEB01000004
[OJEB] seawater metagenome; Sea water
33112
33183
+
Cys
GCA
[ENA]
¢þ
>WENV182564025
OJEE01000004
[OJEE] seawater metagenome; Sea water
113364
113293
-
Cys
GCA
[ENA]
¢þ
>WENV182568986
OJEY01000004
[OJEY] seawater metagenome; Sea water
1568
1639
+
Cys
GCA
[ENA]
¢þ
>WENV182569841
OJFB01000771
[OJFB] seawater metagenome; Sea water
899
970
+
Cys
GCA
[ENA]
¢þ
>WENV182571310
OJFG01011637
[OJFG] seawater metagenome; Sea water
224
153
-
Cys
GCA
[ENA]
¢þ
>WENV182574543
OJFS01000011
[OJFS] seawater metagenome; Sea water
32220
32149
-
Cys
GCA
[ENA]
¢þ
>WENV182576762
OJFY01005653
[OJFY] seawater metagenome; Sea water
743
672
-
Cys
GCA
[ENA]
¢þ
>WENV182577907
OJGM01000005
[OJGM] seawater metagenome; Sea water
16389
16318
-
Cys
GCA
[ENA]
¢þ
>WENV182581690
OJGX01043390
[OJGX] seawater metagenome; Sea water
473
544
+
Cys
GCA
[ENA]
¢þ
>WENV182582083
OJHA01000005
[OJHA] seawater metagenome; Sea water
541
612
+
Cys
GCA
[ENA]
¢þ
>WENV182582429
OJHB01000104
[OJHB] seawater metagenome; Sea water
16974
16903
-
Cys
GCA
[ENA]
¢þ
>WENV182583240
OJHD01001399
[OJHD] seawater metagenome; Sea water
415
486
+
Cys
GCA
[ENA]
¢þ
>WENV182584876
OJHG01021858
[OJHG] seawater metagenome; Sea water
707
778
+
Cys
GCA
[ENA]
¢þ
>WENV182587007
OJHK01031999
[OJHK] seawater metagenome; Sea water
442
371
-
Cys
GCA
[ENA]
¢þ
>WENV182587575
OJHN01000132
[OJHN] seawater metagenome; Sea water
9596
9525
-
Cys
GCA
[ENA]
¢þ
>WENV182592328
OJIR01000025
[OJIR] seawater metagenome; Sea water
32190
32119
-
Cys
GCA
[ENA]
¢þ
>W141282896
JAJB01000023
Actinomycetota
Brevibacterium sp. VCM10 [JAJB]
106310
106239
-
Cys
GCA
[ENA]
¡û
>WENV183054490
OLGU01000001
[OLGU] seawater metagenome; Sea water
77095
77024
-
Cys
GCA
[ENA]
¢þ
>WENV183055097
OLGW01007558
[OLGW] seawater metagenome; Sea water
339
268
-
Cys
GCA
[ENA]
¢þ
>WENV183059191
OLHU01000002
[OLHU] seawater metagenome; Sea water
91823
91894
+
Cys
GCA
[ENA]
¢þ
>WENV183060204
OLHX01000077
[OLHX] seawater metagenome; Sea water
14130
14201
+
Cys
GCA
[ENA]
¢þ
>WENV183511417
OMJG01000250
[OMJG] food metagenome; Cotija cheese
9380
9451
+
Cys
GCA
[ENA]
¢þ
>WENV183729426
PJTQ01038241
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
542
613
+
Cys
GCA
[ENA]
¢þ
>WENV170010960
APMI01036487
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2916
2845
-
Cys
GCA
[ENA]
¢þ
>WENV170311380
CESM01134819
[CESM] marine metagenome genome assembly TARA_102_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
278
349
+
Cys
GCA
[ENA]
¢þ
>WENV170569686
FLMP01269224
[FLMP] seawater metagenome; seawater
73
144
+
Cys
GCA
[ENA]
¢þ
>WENV170570774
FLOH01000022
[FLOH] marine metagenome; water
351658
351729
+
Cys
GCA
[ENA]
¢þ
>WENV170572294
FLOH01000710
[FLOH] marine metagenome; water
37354
37427
+
Cys
GCA
[ENA]
¢þ
>WENV170598006
FUWD010022801
[FUWD] metagenome; unknown
110
181
+
Cys
GCA
[ENA]
¢þ
>WENV170599062
FUWD010060836
[FUWD] metagenome; unknown
259
188
-
Cys
GCA
[ENA]
¢þ
>WENV170615103
FUWD012848910
[FUWD] metagenome; unknown
618
689
+
Cys
GCA
[ENA]
¢þ
>WENV170615886
FUWD012870926
[FUWD] metagenome; unknown
255
326
+
Cys
GCA
[ENA]
¢þ
>WENV170616106
FUWD012877767
[FUWD] metagenome; unknown
572
501
-
Cys
GCA
[ENA]
¢þ
>WENV170616110
FUWD012877768
[FUWD] metagenome; unknown
78
7
-
Cys
GCA
[ENA]
¢þ
>WENV170616877
FUWD012906542
[FUWD] metagenome; unknown
296
225
-
Cys
GCA
[ENA]
¢þ
>WENV170619609
FUWD013017832
[FUWD] metagenome; unknown
59
130
+
Cys
GCA
[ENA]
¢þ
>WENV170619615
FUWD013017861
[FUWD] metagenome; unknown
904
833
-
Cys
GCA
[ENA]
¢þ
>WENV170627448
FUWD013232812
[FUWD] metagenome; unknown
136313
136384
+
Cys
GCA
[ENA]
¢þ
>WENV170627472
FUWD013232918
[FUWD] metagenome; unknown
158
87
-
Cys
GCA
[ENA]
¢þ
>WENV170627719
FUWD013236332
[FUWD] metagenome; unknown
59
130
+
Cys
GCA
[ENA]
¢þ
>WENV170627725
FUWD013236360
[FUWD] metagenome; unknown
904
833
-
Cys
GCA
[ENA]
¢þ
>WENV170922881
MDTG01039477
[MDTG] marine metagenome; seawater
13
84
+
Cys
GCA
[ENA]
¢þ
>WENV170951690
MEHZ011564526
[MEHZ] marine metagenome; marine surface water
2008
2079
+
Cys
GCA
[ENA]
¢þ
>C191031922
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
2362831
2362760
-
Cys
GCA
-
¡û
>C191032065
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
2438883
2438812
-
Cys
GCA
-
¡û
>C191104237
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
1876368
1876439
+
Cys
GCA
-
¡û
>C191134177
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
1672774
1672703
-
Cys
GCA
-
¡û
>W141750771
JNSD01000002
Actinomycetota
actinobacterium acMicro-4 [JNSD]
201213
201284
+
Cys
GCA
[ENA]
¡û
>WENV024312
AACY020796011
Marine microbial communities from Global Ocean Sampling (GOS)
71
144
+
Cys
GCA
[ENA]
>W1910331234
FSLI01000046
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1079 [FSLI]
8176
8105
-
Cys
GCA
[ENA]
¡û
>W1910500017
FXYX01000028
Actinomycetota
Brevibacterium iodinum ATCC 49514 [FXYX]
17336
17265
-
Cys
GCA
[ENA]
¡û
>W1910500022
FXYY01000001
Actinomycetota
Brevibacterium linens ATCC 9172 [FXYY]
217304
217375
+
Cys
GCA
[ENA]
¡û
>W1910500256
FXZD01000001
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
198174
198245
+
Cys
GCA
[ENA]
¡û
>W1910500304
FXZE01000001
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
192789
192860
+
Cys
GCA
[ENA]
¡û
>W1910500451
FXZH01000003
Actinomycetota
Brevibacterium sp. 239c [FXZH]
149719
149648
-
Cys
GCA
[ENA]
¡û
>W1910500497
FXZI01000001
Actinomycetota
Brevibacterium aurantiacum [FXZI]
139611
139682
+
Cys
GCA
[ENA]
¡û
>W1910792244
MRAQ01000073
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
242428
242499
+
Cys
GCA
[ENA]
¡û
>W1910792287
MRAR01000020
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
242428
242499
+
Cys
GCA
[ENA]
¡û
>W1910792378
MRAT01000020
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
242428
242499
+
Cys
GCA
[ENA]
¡û
>W1910792420
MRAU01000332
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
2289
2218
-
Cys
GCA
[ENA]
¡û
>W1910792467
MRAV01000014
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
498779
498708
-
Cys
GCA
[ENA]
¡û
>W1910792481
MRAW01000001
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
25871
25800
-
Cys
GCA
[ENA]
¡û
>W1910804089
MTCJ01000069
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
498752
498681
-
Cys
GCA
[ENA]
¡û
>W1911203183
NRGP01000009
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
53806
53877
+
Cys
GCA
[ENA]
¡û
>W1911203609
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
4157325
4157254
-
Cys
GCA
[ENA]
¡û
>W1911696901
QNGF01000001
Actinomycetota
Brevibacterium casei S51 [QNGF]
107625
107696
+
Cys
GCA
[ENA]
¡û
>W1810057057
PDHL01000041
Actinomycetota
Brevibacterium epidermidis EZ-K02 [PDHL]
50748
50677
-
Cys
GCA
[ENA]
¡û
>W1810121376
PHUH01000001
Actinomycetota
Microcella sp. HL-107 [PHUH]
719468
719397
-
Cys
GCA
[ENA]
¡û
>W1810186023
PKGO01000009
Actinomycetota
Brevibacterium ravenspurgense UMB0426 [PKGO]
91432
91361
-
Cys
GCA
[ENA]
¡û
>W1810721496
QNSB01000007
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
139040
139111
+
Cys
GCA
[ENA]
¡û
>W1810756532
QPGC01000013
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
108021
108092
+
Cys
GCA
[ENA]
¡û
>W1810917680
QWBV01000033
Actinomycetota
Leucobacter sp. wl10 [QWBV]
48826
48897
+
Cys
GCA
[ENA]
¡û
>SRA1023501
SRR035084.112166
454 Sequencing (SRP001805)
79
150
+
Cys
GCA
[SRA]
>SRA1024442
SRR035084.325334
454 Sequencing (SRP001805)
94
165
+
Cys
GCA
[SRA]
>SRA1027672
SRR035086.169642
454 Sequencing (SRP001807)
201
272
+
Cys
GCA
[SRA]
>SRA1027920
SRR035086.219205
454 Sequencing (SRP001807)
230
159
-
Cys
GCA
[SRA]
>SRA1029274
SRR035087.101475
454 Sequencing (SRP001808)
259
188
-
Cys
GCA
[SRA]
>SRA1030653
SRR035087.310149
454 Sequencing (SRP001808)
259
188
-
Cys
GCA
[SRA]
>SRA1030868
SRR035087.341714
454 Sequencing (SRP001808)
259
188
-
Cys
GCA
[SRA]
>SRA1032083
SRR035087.549241
454 Sequencing (SRP001808)
196
125
-
Cys
GCA
[SRA]
>SRA1034757
SRR035089.168053
454 Sequencing (SRP001810)
17
88
+
Cys
GCA
[SRA]
>SRA1035184
SRR035089.255917
454 Sequencing (SRP001810)
17
88
+
Cys
GCA
[SRA]
>SRA1045316
SRR035093.65485
454 Sequencing (SRP001814)
328
257
-
Cys
GCA
[SRA]
>SRA1045603
SRR035093.132481
454 Sequencing (SRP001814)
231
302
+
Cys
GCA
[SRA]
>SRA1045641
SRR035093.139566
454 Sequencing (SRP001814)
328
257
-
Cys
GCA
[SRA]
>SRA1045663
SRR035093.143169
454 Sequencing (SRP001814)
352
281
-
Cys
GCA
[SRA]
>SRA1050876
SRR035096.40311
454 Sequencing (SRP001817)
278
207
-
Cys
GCA
[SRA]
>SRA1051581
SRR035098.34343
454 Sequencing (SRP001819)
208
137
-
Cys
GCA
[SRA]
>SRA1051726
SRR035098.64457
454 Sequencing (SRP001819)
208
137
-
Cys
GCA
[SRA]
>SRA1052058
SRR035098.132323
454 Sequencing (SRP001819)
192
263
+
Cys
GCA
[SRA]
>SRA1052719
SRR035098.260497
454 Sequencing (SRP001819)
59
130
+
Cys
GCA
[SRA]
>SRA1052991
SRR035098.315265
454 Sequencing (SRP001819)
110
181
+
Cys
GCA
[SRA]
>SRA1053079
SRR035098.332294
454 Sequencing (SRP001819)
182
253
+
Cys
GCA
[SRA]
>W1511008783
JHBX01000123
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
8482
8553
+
Cys
GCA
[ENA]
¡û
>W1511511085
JXSQ01000005
Actinomycetota
Leucobacter komagatae VKM ST2845 [JXSQ]
5628
5555
-
Cys
GCA
[ENA]
¡û
>W1511585431
LAYO01000089
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
22717
22646
-
Cys
GCA
[ENA]
¡û
>W11178092
AGCW01000187
Actinomycetota
Leucobacter chromiiresistens JG 31 [AGCW]
19061
18990
-
Cys
GCA
[ENA]
¡û
>C161078916
CP014869
Actinomycetota
Brevibacterium linens BS258 [CP014869]
2254563
2254492
-
Cys
GCA
[Ensembl]
¡û
>W1610590387
LDRK01000040
Actinomycetota
Leucobacter chromiiresistens [LDRK]
1944
1873
-
Cys
GCA
[ENA]
¡û
>W1610846317
LPXX01000008
Actinomycetota
Brevibacterium ravenspurgense 5401308 = CCUG 53855 [LPXX]
240383
240310
-
Cys
GCA
[ENA]
¡û
>W1610857101
LQQC01000010
Actinomycetota
Brevibacterium ravenspurgense [LQQC]
205191
205264
+
Cys
GCA
[ENA]
¡û
>W1610857938
LQQR01000023
Actinomycetota
Brevibacterium casei [LQQR]
23198
23269
+
Cys
GCA
[ENA]
¡û
>W1710526126
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
2276524
2276595
+
Cys
GCA
[ENA]
¡û
>W1710709667
LDRK01000040
Actinomycetota
Leucobacter chromiiresistens [LDRK]
1944
1873
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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