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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480868 (91 seq.)
>W1710989974
LPWU01000133
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
114759
114832
+
Gly
CCC
[ENA]
¡û
>W1711143134
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
348088
348161
+
Gly
CCC
[ENA]
¡û
>W1711143159
LVHD01000113
Alphaproteobacteria
Acetobacter malorum [LVHD]
2869
2796
-
Gly
CCC
[ENA]
¡û
>W1711577303
MNPS01000001
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
426642
426569
-
Gly
CCC
[ENA]
¡û
>W1711577349
MNPT01000001
Alphaproteobacteria
Saccharibacter sp. 3.A.1 [MNPT]
415875
415802
-
Gly
CCC
[ENA]
¡û
>C171033019
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
1035980
1035907
-
Gly
CCC
-
¡û
>C171036250
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
19502
19429
-
Gly
CCC
-
¡û
>C171108991
CP020554
Alphaproteobacteria
Parasaccharibacter apium G7_7_3c [CP020554]
1152676
1152749
+
Gly
CCC
-
¡û
>W141224582
BAIN01000077
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
3724
3797
+
Gly
CCC
[ENA]
¡û
>W141226116
BAJU01000013
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
54850
54777
-
Gly
CCC
[ENA]
¡û
>W141226206
BAJW01000037
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
20441
20514
+
Gly
CCC
[ENA]
¡û
>W141247994
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
799429
799356
-
Gly
CCC
[ENA]
¡û
>WENV170669496
LAHS01000342
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
158396
158469
+
Gly
CCC
[ENA]
¢þ
>C181071379
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
3669354
3669281
-
Gly
CCC
-
¡û
>C181077171
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
2195998
2195925
-
Gly
CCC
-
¡û
>C191002711
AP018515
Alphaproteobacteria
Acetobacter orientalis FAN1 [AP018515]
1020860
1020787
-
Gly
CCC
-
¡û
>C191157866
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
1432412
1432485
+
Gly
CCC
-
¡û
>C191158424
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
1299685
1299758
+
Gly
CCC
-
¡û
>C191166445
CP039459
Alphaproteobacteria
Acetobacteraceae bacterium 880 [CP039459]
1659489
1659562
+
Gly
CCC
-
¡û
>C191166507
CP039460
Alphaproteobacteria
Acetobacteraceae bacterium 868 [CP039460]
1797907
1797980
+
Gly
CCC
-
¡û
>W141775559
JOJU01000067
Alphaproteobacteria
Acetobacter malorum [JOJU]
347706
347779
+
Gly
CCC
[ENA]
¡û
>W1910008280
BDEY01000019
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
83589
83662
+
Gly
CCC
[ENA]
¡û
>W1910182312
BJMU01000001
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
653862
653789
-
Gly
CCC
[ENA]
¡û
>W1910182365
BJMV01000003
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
68653
68580
-
Gly
CCC
[ENA]
¡û
>W1910697224
MEJG01000001
Alphaproteobacteria
Parasaccharibacter apium AS1 [MEJG]
374334
374261
-
Gly
CCC
[ENA]
¡û
>W1910753230
MKHC01000019
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
44987
45060
+
Gly
CCC
[ENA]
¡û
>W1910871838
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
549980
549907
-
Gly
CCC
[ENA]
¡û
>W1910872336
NDFO01000004
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
112089
112162
+
Gly
CCC
[ENA]
¡û
>W1910872384
NDFP01000004
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
112089
112162
+
Gly
CCC
[ENA]
¡û
>W1911410418
NWTP01000001
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
654093
654020
-
Gly
CCC
[ENA]
¡û
>W1810044979
LMYH01000006
Alphaproteobacteria
Parasaccharibacter apium A29 [LMYH]
8539
8466
-
Gly
CCC
[ENA]
¡û
>W1810045022
LMYI01000002
Alphaproteobacteria
Parasaccharibacter apium B8 [LMYI]
79804
79731
-
Gly
CCC
[ENA]
¡û
>W1810045083
LMYJ01000007
Alphaproteobacteria
Parasaccharibacter apium C6 [LMYJ]
38149
38222
+
Gly
CCC
[ENA]
¡û
>W1810053995
PDEU01000005
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
114660
114733
+
Gly
CCC
[ENA]
¡û
>C151091077
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
1579250
1579323
+
Gly
CCC
[Ensembl]
¡û
>W1510011580
BBMU01000232
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
25344
25417
+
Gly
CCC
[ENA]
¡û
>C10100930
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
722011
722084
+
Gly
CCC
[Ensembl]
¡û
>W1511271172
JOKM01000018
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
267868
267941
+
Gly
CCC
[ENA]
¡û
>W11184387
BABS01000119
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
439
366
-
Gly
CCC
[ENA]
¡û
>C161105514
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
2869580
2869653
+
Gly
CCC
[Ensembl]
¡û
>C161105562
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1133546
1133619
+
Gly
CCC
[Ensembl]
¡û
>W121122947
BACF01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
114759
114832
+
Gly
CCC
[ENA]
¡û
>W1610040745
BAMV01000011
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
243198
243271
+
Gly
CCC
[ENA]
¡û
>W1610040800
BAMW01000038
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
37580
37653
+
Gly
CCC
[ENA]
¡û
>W1610040831
BAMX01000010
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
3962
3889
-
Gly
CCC
[ENA]
¡û
>W1610040867
BAMY01000011
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
12834
12907
+
Gly
CCC
[ENA]
¡û
>W1610040911
BAMZ01000009
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
94127
94054
-
Gly
CCC
[ENA]
¡û
>W1610623945
LHZA01000102
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
1842
1769
-
Gly
CCC
[ENA]
¡û
>W1610624057
LHZC01000027
Alphaproteobacteria
Acetobacter malorum [LHZC]
9921
9994
+
Gly
CCC
[ENA]
¡û
>W1610624222
LHZF01000162
Alphaproteobacteria
Acetobacter malorum [LHZF]
27282
27355
+
Gly
CCC
[ENA]
¡û
>W1610624706
LHZQ01000170
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
14618
14691
+
Gly
CCC
[ENA]
¡û
>W1610624854
LHZT01000119
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
69382
69309
-
Gly
CCC
[ENA]
¡û
>W1610624902
LHZU01000129
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
49480
49407
-
Gly
CCC
[ENA]
¡û
>W1610624953
LHZV01000063
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
166706
166633
-
Gly
CCC
[ENA]
¡û
>W1610625023
LHZX01000267
Alphaproteobacteria
Acetobacter malorum [LHZX]
12783
12710
-
Gly
CCC
[ENA]
¡û
>W1610625062
LHZY01000002
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
73480
73553
+
Gly
CCC
[ENA]
¡û
>W1610625128
LHZZ01000583
Alphaproteobacteria
Acetobacter malorum [LHZZ]
8505
8432
-
Gly
CCC
[ENA]
¡û
>W1610625188
LIAA01000059
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
4346
4419
+
Gly
CCC
[ENA]
¡û
>W1610954142
LVHD01000018
Alphaproteobacteria
Acetobacter malorum [LVHD]
348088
348161
+
Gly
CCC
[ENA]
¡û
>W1610954167
LVHD01000113
Alphaproteobacteria
Acetobacter malorum [LVHD]
2869
2796
-
Gly
CCC
[ENA]
¡û
>W1710037943
BAMV01000011
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
243198
243271
+
Gly
CCC
[ENA]
¡û
>W1710037998
BAMW01000038
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
37580
37653
+
Gly
CCC
[ENA]
¡û
>W1710038029
BAMX01000010
Alphaproteobacteria
Acetobacter orientalis 21F-2 [BAMX]
3962
3889
-
Gly
CCC
[ENA]
¡û
>W1710038065
BAMY01000011
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
12834
12907
+
Gly
CCC
[ENA]
¡û
>W1710038109
BAMZ01000009
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
94127
94054
-
Gly
CCC
[ENA]
¡û
>W1710613513
JATM01000003
Alphaproteobacteria
Bombella intestini [JATM]
193661
193734
+
Gly
CCC
[ENA]
¡û
>W1710624269
JOMM01000027
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
14569
14642
+
Gly
CCC
[ENA]
¡û
>W1710624288
JOMN01000007
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
79943
80016
+
Gly
CCC
[ENA]
¡û
>W1710624344
JOMO01000021
Alphaproteobacteria
Acetobacter orientalis [JOMO]
18967
18894
-
Gly
CCC
[ENA]
¡û
>W1710624409
JOMP01000052
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
71150
71223
+
Gly
CCC
[ENA]
¡û
>W1710624416
JOMQ01000007
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
95469
95542
+
Gly
CCC
[ENA]
¡û
>W1710624473
JOOY01000038
Alphaproteobacteria
Acetobacter orientalis [JOOY]
52557
52630
+
Gly
CCC
[ENA]
¡û
>W1710624507
JOOZ01000039
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
49548
49475
-
Gly
CCC
[ENA]
¡û
>W1710624565
JOPA01000026
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
1817
1744
-
Gly
CCC
[ENA]
¡û
>W1710624630
JOPC01000016
Alphaproteobacteria
Acetobacter persici [JOPC]
632022
631949
-
Gly
CCC
[ENA]
¡û
>W1710624662
JOPD01000002
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
89907
89980
+
Gly
CCC
[ENA]
¡û
>W1710624766
JOPG01000014
Alphaproteobacteria
Acetobacter malorum [JOPG]
21194
21267
+
Gly
CCC
[ENA]
¡û
>W1710624841
JOPI01000016
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
49168
49095
-
Gly
CCC
[ENA]
¡û
>W1710624881
JOPJ01000007
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
8606
8679
+
Gly
CCC
[ENA]
¡û
>W1710624910
JOPK01000004
Alphaproteobacteria
Acetobacter orientalis [JOPK]
230379
230452
+
Gly
CCC
[ENA]
¡û
>W1710755063
LHZA01000102
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
1842
1769
-
Gly
CCC
[ENA]
¡û
>W1710755175
LHZC01000027
Alphaproteobacteria
Acetobacter malorum [LHZC]
9921
9994
+
Gly
CCC
[ENA]
¡û
>W1710755340
LHZF01000162
Alphaproteobacteria
Acetobacter malorum [LHZF]
27282
27355
+
Gly
CCC
[ENA]
¡û
>W1710755824
LHZQ01000170
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
14618
14691
+
Gly
CCC
[ENA]
¡û
>W1710755972
LHZT01000119
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
69382
69309
-
Gly
CCC
[ENA]
¡û
>W1710756020
LHZU01000129
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
49480
49407
-
Gly
CCC
[ENA]
¡û
>W1710756071
LHZV01000063
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
166706
166633
-
Gly
CCC
[ENA]
¡û
>W1710756141
LHZX01000267
Alphaproteobacteria
Acetobacter malorum [LHZX]
12783
12710
-
Gly
CCC
[ENA]
¡û
>W1710756180
LHZY01000002
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
73480
73553
+
Gly
CCC
[ENA]
¡û
>W1710756246
LHZZ01000583
Alphaproteobacteria
Acetobacter malorum [LHZZ]
8505
8432
-
Gly
CCC
[ENA]
¡û
>W1710756306
LIAA01000059
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
4346
4419
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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