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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480871 (68 seq.)
>W1710989960
LPWU01000127
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
34186
34113
-
Gly
TCC
[ENA]
¡û
>W1711257938
LYUD01000097
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
110352
110279
-
Gly
TCC
[ENA]
¡û
>C171036154
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2613112
2613185
+
Gly
TCC
-
¡û
>C171036247
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
610929
610856
-
Gly
TCC
-
¡û
>C171120263
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
1371915
1371988
+
Gly
TCC
-
¡û
>C171120358
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1159452
1159379
-
Gly
TCC
-
¡û
>C171126456
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1218886
1218813
-
Gly
TCC
-
¡û
>W141428596
JEOA01000001
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
188738
188665
-
Gly
TCC
[ENA]
¡û
>WENV170669382
LAHS01000063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
374136
374063
-
Gly
TCC
[ENA]
¢þ
>C181063297
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
123431
123504
+
Gly
TCC
-
¡û
>C181071362
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
1081895
1081968
+
Gly
TCC
-
¡û
>C181077164
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
2557376
2557449
+
Gly
TCC
-
¡û
>C181088327
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
1426300
1426227
-
Gly
TCC
-
¡û
>C181193630
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
139441
139514
+
Gly
TCC
-
¡û
>W1910007902
BDER01000002
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
54181
54254
+
Gly
TCC
[ENA]
¡û
>W1910007947
BDES01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
54091
54164
+
Gly
TCC
[ENA]
¡û
>W1910007997
BDES01000076
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
24720
24647
-
Gly
TCC
[ENA]
¡û
>W1910008009
BDET01000003
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
5307
5380
+
Gly
TCC
[ENA]
¡û
>W1910008056
BDEU01000003
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
54064
54137
+
Gly
TCC
[ENA]
¡û
>W1910008110
BDEV01000003
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
54288
54361
+
Gly
TCC
[ENA]
¡û
>W1910008159
BDEV01000145
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
1809
1882
+
Gly
TCC
[ENA]
¡û
>W1910008167
BDEW01000002
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
54085
54158
+
Gly
TCC
[ENA]
¡û
>W1910008215
BDEX01000002
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
54064
54137
+
Gly
TCC
[ENA]
¡û
>W1910008266
BDEX01000133
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
1809
1882
+
Gly
TCC
[ENA]
¡û
>W1910008273
BDEY01000002
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
54085
54158
+
Gly
TCC
[ENA]
¡û
>W1910008321
BDEZ01000001
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
54077
54150
+
Gly
TCC
[ENA]
¡û
>W1910182367
BJMV01000004
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
146181
146108
-
Gly
TCC
[ENA]
¡û
>C141012365
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1683928
1684001
+
Gly
TCC
[Ensembl]
¡û
>W1910657456
MAPU01000015
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
53991
54064
+
Gly
TCC
[ENA]
¡û
>W1910753229
MKHC01000015
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
16175
16102
-
Gly
TCC
[ENA]
¡û
>W1910871871
NCXK01000021
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
13438
13511
+
Gly
TCC
[ENA]
¡û
>W1910872330
NDFO01000003
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
86324
86397
+
Gly
TCC
[ENA]
¡û
>W1910872370
NDFP01000001
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
370949
370876
-
Gly
TCC
[ENA]
¡û
>W1810054009
PDEU01000009
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
94077
94004
-
Gly
TCC
[ENA]
¡û
>C151091074
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
983207
983280
+
Gly
TCC
[Ensembl]
¡û
>W1510011561
BBMU01000004
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
27343
27416
+
Gly
TCC
[ENA]
¡û
>C10100645
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100699
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100756
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100813
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100870
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100927
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10100984
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>C10101041
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
126075
126148
+
Gly
TCC
[Ensembl]
¡û
>W1511271167
JOKL01000118
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
36108
36035
-
Gly
TCC
[ENA]
¡û
>W1511271189
JOKM01000075
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
41810
41737
-
Gly
TCC
[ENA]
¡û
>W11149331
AEUP01000028
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
131632
131705
+
Gly
TCC
[ENA]
¡û
>W11184356
BABS01000007
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
32155
32228
+
Gly
TCC
[ENA]
¡û
>C161001884
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
123558
123631
+
Gly
TCC
-
¡û
>C161031432
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
126705
126778
+
Gly
TCC
[Ensembl]
¡û
>C161105539
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
1429380
1429307
-
Gly
TCC
[Ensembl]
¡û
>C161105555
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
561744
561817
+
Gly
TCC
[Ensembl]
¡û
>W121122963
BACF01000007
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
34186
34113
-
Gly
TCC
[ENA]
¡û
>W121123013
BACG01000014
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
11155
11082
-
Gly
TCC
[ENA]
¡û
>W121126846
CADO01000002
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
54069
54142
+
Gly
TCC
[ENA]
¡û
>W121126888
CADQ01000002
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
54038
54111
+
Gly
TCC
[ENA]
¡û
>W1610040930
BAMZ01000027
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
86308
86381
+
Gly
TCC
[ENA]
¡û
>W1610624712
LHZQ01000191
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
12044
11971
-
Gly
TCC
[ENA]
¡û
>W1610624852
LHZT01000118
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
73307
73380
+
Gly
TCC
[ENA]
¡û
>W1610624923
LHZU01000148
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
75068
75141
+
Gly
TCC
[ENA]
¡û
>W1611020410
LYUD01000097
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
110352
110279
-
Gly
TCC
[ENA]
¡û
>W1710038128
BAMZ01000027
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
86308
86381
+
Gly
TCC
[ENA]
¡û
>W1710624282
JOMM01000054
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
73180
73253
+
Gly
TCC
[ENA]
¡û
>W1710624503
JOOZ01000029
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
123106
123033
-
Gly
TCC
[ENA]
¡û
>W1710624660
JOPD01000001
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
49612
49685
+
Gly
TCC
[ENA]
¡û
>W1710755830
LHZQ01000191
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
12044
11971
-
Gly
TCC
[ENA]
¡û
>W1710755970
LHZT01000118
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
73307
73380
+
Gly
TCC
[ENA]
¡û
>W1710756041
LHZU01000148
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
75068
75141
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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