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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480881 (75 seq.)
>W1710794625
LJQI01000342
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LJQI]
9178
9251
+
Gly
CCC
[ENA]
¡û
>W1710853131
LLWI01000080
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
211746
211673
-
Gly
CCC
[ENA]
¡û
>W1710853190
LLWJ01000070
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
211746
211673
-
Gly
CCC
[ENA]
¡û
>W131052603
AMZE01000001
Gammaproteobacteria
Pseudomonas putida MTCC 5279 [AMZE]
63073
63000
-
Gly
CCC
[ENA]
¡û
>W1711082382
LSTU01000071
Gammaproteobacteria
Pseudomonas monteilii [LSTU]
16949
17022
+
Gly
CCC
[ENA]
¡û
>W131155159
AQOH01000002
Gammaproteobacteria
Pseudomonas fuscovaginae SE-1 [AQOH]
19491
19564
+
Gly
CCC
[ENA]
¡û
>W131191767
ASJM01006181
Gammaproteobacteria
Pseudomonas syringae [ASJM]
3957
3884
-
Gly
CCC
[ENA]
¡û
>W1711353446
MDEN01000069
Gammaproteobacteria
Pseudomonas graminis [MDEN]
432043
431970
-
Gly
CCC
[ENA]
¡û
>W1711635742
MPUZ01000009
Gammaproteobacteria
Pseudomonas aeruginosa [MPUZ]
185
112
-
Gly
CCC
[ENA]
¡û
>C018066
AE016853
Gammaproteobacteria
Pseudomonas syringae pv. tomato str. DC3000 [AE016853]
4787411
4787484
+
Gly
CCC
[Ensembl]
¡û
>WENV180311068
OBJT01104126
[OBJT] soil metagenome; soil
126
53
-
Gly
CCC
[ENA]
¢þ
>W141195412
AYUC01000011
Gammaproteobacteria
Pseudomonas aeruginosa ATCC 15442 [AYUC]
193067
193140
+
Gly
CCC
[ENA]
¡û
>W141427242
JENF01000193
Gammaproteobacteria
Pseudomonas monteilii [JENF]
40339
40412
+
Gly
CCC
[ENA]
¡û
>WENV170965633
MTEU01005137
[MTEU] soil metagenome; naturally attenuated soil
56572
56499
-
Gly
CCC
[ENA]
¢þ
>C181202873
CP031641
Gammaproteobacteria
Pseudomonas parafulva JBCS1880 [CP031641]
3752467
3752540
+
Gly
CCC
-
¡û
>C191020618
CP022562
Gammaproteobacteria
Pseudomonas monteilii B5 [CP022562]
4719091
4719164
+
Gly
CCC
-
¡û
>C191100908
CP033104
Gammaproteobacteria
Pseudomonas sp. LTGT-11-2Z [CP033104]
1357417
1357344
-
Gly
CCC
-
¡û
>C191185364
CP041013
Gammaproteobacteria
Pseudomonas aeruginosa FDAARGOS_610 [CP041013]
1733759
1733686
-
Gly
CCC
-
¡û
>C191221735
LR590473
Gammaproteobacteria
Pseudomonas aeruginosa NCTC13359 [LR590473]
5494929
5495002
+
Gly
CCC
-
¡û
>W09124466
ACHU01000115
Gammaproteobacteria
Pseudomonas amygdali pv. tabaci ATCC 11528 [ACHU]
152984
152911
-
Gly
CCC
[ENA]
¡û
>W1910294485
FRLM01000012
Gammaproteobacteria
Pseudomonas aeruginosa [FRLM]
448829
448902
+
Gly
CCC
[ENA]
¡û
>W1910294606
FRLO01000051
Gammaproteobacteria
Pseudomonas aeruginosa [FRLO]
448823
448896
+
Gly
CCC
[ENA]
¡û
>W1910294698
FRLQ01000008
Gammaproteobacteria
Pseudomonas aeruginosa [FRLQ]
195812
195885
+
Gly
CCC
[ENA]
¡û
>W1910294774
FRLR01000054
Gammaproteobacteria
Pseudomonas aeruginosa [FRLR]
448832
448905
+
Gly
CCC
[ENA]
¡û
>W1910295127
FRLX01000040
Gammaproteobacteria
Pseudomonas aeruginosa [FRLX]
9701
9628
-
Gly
CCC
[ENA]
¡û
>W1910295198
FRLZ01000004
Gammaproteobacteria
Pseudomonas aeruginosa [FRLZ]
9699
9626
-
Gly
CCC
[ENA]
¡û
>W1910295250
FRMA01000003
Gammaproteobacteria
Pseudomonas aeruginosa [FRMA]
193094
193167
+
Gly
CCC
[ENA]
¡û
>W1910295306
FRMB01000008
Gammaproteobacteria
Pseudomonas aeruginosa [FRMB]
193087
193160
+
Gly
CCC
[ENA]
¡û
>W1910295384
FRMC01000022
Gammaproteobacteria
Pseudomonas aeruginosa [FRMC]
9695
9622
-
Gly
CCC
[ENA]
¡û
>W1910295448
FRMD01000026
Gammaproteobacteria
Pseudomonas aeruginosa [FRMD]
9693
9620
-
Gly
CCC
[ENA]
¡û
>W1910295476
FRME01000002
Gammaproteobacteria
Pseudomonas aeruginosa [FRME]
9701
9628
-
Gly
CCC
[ENA]
¡û
>W1910295565
FRMF01000031
Gammaproteobacteria
Pseudomonas aeruginosa [FRMF]
9697
9624
-
Gly
CCC
[ENA]
¡û
>W1910295707
FRMI01000003
Gammaproteobacteria
Pseudomonas aeruginosa [FRMI]
9693
9620
-
Gly
CCC
[ENA]
¡û
>W1910747763
MIND01000018
Gammaproteobacteria
Pseudomonas putida KT-27 [MIND]
4837711
4837784
+
Gly
CCC
[ENA]
¡û
>W1910766678
MOAV01000001
Gammaproteobacteria
Pseudomonas protegens Wayne [MOAV]
3081860
3081933
+
Gly
CCC
[ENA]
¡û
>W1910766758
MOAW01000003
Gammaproteobacteria
Pseudomonas protegens Clinton [MOAW]
3081526
3081599
+
Gly
CCC
[ENA]
¡û
>W1910767372
MOBH01000001
Gammaproteobacteria
Pseudomonas brassicacearum Delaware [MOBH]
376354
376427
+
Gly
CCC
[ENA]
¡û
>W1911176010
NQKJ01000087
Gammaproteobacteria
Pseudomonas lundensis L1788 [NQKJ]
4094
4021
-
Gly
CCC
[ENA]
¡û
>W1911644156
PZKR01000020
Gammaproteobacteria
Pseudomonas putida JR16 [PZKR]
160968
160895
-
Gly
CCC
[ENA]
¡û
>W1810158498
PJCQ01000010
Gammaproteobacteria
Pseudomonas guariconensis MR144 [PJCQ]
55381
55308
-
Gly
CCC
[ENA]
¡û
>W1810248746
PQBU01000017
Gammaproteobacteria
Pseudomonas aeruginosa Ps04 [PQBU]
9216
9143
-
Gly
CCC
[ENA]
¡û
>W1810487586
QAYQ01000108
Gammaproteobacteria
Pseudomonas putida KCJK7916 [QAYQ]
58771
58844
+
Gly
CCC
[ENA]
¡û
>W1810494381
QBEP01000011
Gammaproteobacteria
Pseudomonas aeruginosa HIAE_PA07 [QBEP]
315
242
-
Gly
CCC
[ENA]
¡û
>W1510621632
CUYE01000024
Gammaproteobacteria
Pseudomonas aeruginosa [CUYE]
834133
834206
+
Gly
CCC
[ENA]
¡û
>W1511407526
JTOI01000057
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE15012 [JTOI]
72239
72312
+
Gly
CCC
[ENA]
¡û
>W1511415275
JTTU01000049
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE14868 [JTTU]
312
239
-
Gly
CCC
[ENA]
¡û
>W1511423694
JTZU01000005
Gammaproteobacteria
Pseudomonas aeruginosa AZPAE12420 [JTZU]
312
239
-
Gly
CCC
[ENA]
¡û
>W1511451081
JVCT01000044
Gammaproteobacteria
Pseudomonas aeruginosa 545_PAER [JVCT]
103618
103691
+
Gly
CCC
[ENA]
¡û
>W11130791
AEAP01000187
Gammaproteobacteria
Pseudomonas amygdali pv. tabaci ATCC 11528 [AEAP]
7879
7806
-
Gly
CCC
[ENA]
¡û
>W1511530657
JYKV01000011
Gammaproteobacteria
Pseudomonas oryzihabitans RIT370 [JYKV]
86376
86303
-
Gly
CCC
[ENA]
¡û
>W1511587022
LAZV01000073
Gammaproteobacteria
Pseudomonas syringae group genomosp. 3 pv. persicae NCPPB 2254 [LAZV]
4044
3971
-
Gly
CCC
[ENA]
¡û
>W11169833
AFOY01000074
Gammaproteobacteria
Pseudomonas fluorescens HK44 [AFOY]
25349
25422
+
Gly
CCC
[ENA]
¡û
>W11187006
CADW01000059
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADW]
234
161
-
Gly
CCC
[ENA]
¡û
>W11187053
CADX01000047
Gammaproteobacteria
Pseudomonas fluorescens Wayne1 [CADX]
36764
36691
-
Gly
CCC
[ENA]
¡û
>W121031725
AHGZ01000121
Gammaproteobacteria
Pseudomonas monteilii QM [AHGZ]
1422
1349
-
Gly
CCC
[ENA]
¡û
>W121070780
AJXI01000036
Gammaproteobacteria
Pseudomonas amygdali pv. tabaci str. 6605 [AJXI]
4931
4858
-
Gly
CCC
[ENA]
¡û
>W1610060134
BCBM01000063
Gammaproteobacteria
Pseudomonas sp. NBRC 111136 [BCBM]
79759
79832
+
Gly
CCC
[ENA]
¡û
>W1610060476
BCBU01000034
Gammaproteobacteria
Pseudomonas sp. NBRC 111144 [BCBU]
2360
2287
-
Gly
CCC
[ENA]
¡û
>W1610591973
LDSM01000004
Gammaproteobacteria
Pseudomonas parafulva [LDSM]
17740
17813
+
Gly
CCC
[ENA]
¡û
>W1610592311
LDSR01000052
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
6277
6350
+
Gly
CCC
[ENA]
¡û
>W1610616687
LGRH01000034
Gammaproteobacteria
Pseudomonas putida [LGRH]
42521
42594
+
Gly
CCC
[ENA]
¡û
>W1610630154
LIID01000054
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LIID]
374
301
-
Gly
CCC
[ENA]
¡û
>W1610658582
LJQI01000342
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LJQI]
9178
9251
+
Gly
CCC
[ENA]
¡û
>W1610716255
LLWI01000080
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
211746
211673
-
Gly
CCC
[ENA]
¡û
>W1610716314
LLWJ01000070
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
211746
211673
-
Gly
CCC
[ENA]
¡û
>W1610921167
LSTU01000071
Gammaproteobacteria
Pseudomonas monteilii [LSTU]
16949
17022
+
Gly
CCC
[ENA]
¡û
>W1710055886
BCAP01000077
Gammaproteobacteria
Pseudomonas monteilii [BCAP]
374
301
-
Gly
CCC
[ENA]
¡û
>W1710057257
BCBM01000063
Gammaproteobacteria
Pseudomonas sp. NBRC 111136 [BCBM]
79759
79832
+
Gly
CCC
[ENA]
¡û
>W1710057731
BCBU01000034
Gammaproteobacteria
Pseudomonas sp. NBRC 111144 [BCBU]
2360
2287
-
Gly
CCC
[ENA]
¡û
>W1710511771
FMYX01000006
Gammaproteobacteria
Pseudomonas guariconensis [FMYX]
157303
157230
-
Gly
CCC
[ENA]
¡û
>W1710537215
FNTR01000004
Gammaproteobacteria
Pseudomonas proteolytica [FNTR]
2312573
2312500
-
Gly
CCC
[ENA]
¡û
>W1710711253
LDSM01000004
Gammaproteobacteria
Pseudomonas parafulva [LDSM]
17740
17813
+
Gly
CCC
[ENA]
¡û
>W1710711591
LDSR01000052
Gammaproteobacteria
Pseudomonas psychrotolerans [LDSR]
6277
6350
+
Gly
CCC
[ENA]
¡û
>W1710741878
LGRH01000034
Gammaproteobacteria
Pseudomonas putida [LGRH]
42521
42594
+
Gly
CCC
[ENA]
¡û
>W1710761293
LIID01000054
Gammaproteobacteria
Pseudomonas amygdali pv. eriobotryae [LIID]
374
301
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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