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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480893 (99 seq.)
>W1710811944
LKIW01000132
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
89180
89107
-
Cys
GCA
[ENA]
¡û
>W1711005485
LQNP01000003
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
219537
219464
-
Cys
GCA
[ENA]
¡û
>W131171873
ARGN01000047
Betaproteobacteria
Chitiniphilus shinanonensis DSM 23277 [ARGN]
144509
144436
-
Cys
GCA
[ENA]
¡û
>W1711185366
LWNI01000009
Betaproteobacteria
Neisseria sp. HMSC31F04 [LWNI]
19414
19341
-
Cys
GCA
[ENA]
¡û
>W131230531
AUHR01000013
Betaproteobacteria
Laribacter hongkongensis DSM 14985 [AUHR]
38342
38269
-
Cys
GCA
[ENA]
¡û
>W1711484380
MKCR01000001
Betaproteobacteria
Chromobacterium amazonense [MKCR]
36929
36856
-
Cys
GCA
[ENA]
¡û
>W1711484508
MKCS01000001
Betaproteobacteria
Chromobacterium sphagni Feb-37 [MKCS]
2616220
2616293
+
Cys
GCA
[ENA]
¡û
>W1711484592
MKCT01000017
Betaproteobacteria
Chromobacterium sphagni 14B-1 [MKCT]
427581
427654
+
Cys
GCA
[ENA]
¡û
>W1711664325
MQZX01000005
Betaproteobacteria
Chromobacterium violaceum pseudoviolaceum [MQZX]
106
179
+
Cys
GCA
[ENA]
¡û
>W1711664364
MQZY01000013
Betaproteobacteria
Chromobacterium aquaticum [MQZY]
101
174
+
Cys
GCA
[ENA]
¡û
>W1711664396
MQZZ01000013
Betaproteobacteria
Chromobacterium subtsugae [MQZZ]
101
174
+
Cys
GCA
[ENA]
¡û
>W1711747388
MUKQ01000010
Betaproteobacteria
Chromobacterium violaceum [MUKQ]
179397
179470
+
Cys
GCA
[ENA]
¡û
>W1711747470
MUKR01000009
Betaproteobacteria
Chromobacterium violaceum [MUKR]
29380
29307
-
Cys
GCA
[ENA]
¡û
>W1711747559
MUKS01000011
Betaproteobacteria
Chromobacterium violaceum [MUKS]
178726
178799
+
Cys
GCA
[ENA]
¡û
>W1711747605
MUKT01000006
Betaproteobacteria
Chromobacterium haemolyticum [MUKT]
140949
140876
-
Cys
GCA
[ENA]
¡û
>W1711747718
MUKU01000057
Betaproteobacteria
Chromobacterium haemolyticum [MUKU]
17314
17387
+
Cys
GCA
[ENA]
¡û
>W1711747753
MUKV01000010
Betaproteobacteria
Chromobacterium haemolyticum [MUKV]
105424
105497
+
Cys
GCA
[ENA]
¡û
>W1711747834
MUKW01000008
Betaproteobacteria
Chromobacterium violaceum [MUKW]
179359
179432
+
Cys
GCA
[ENA]
¡û
>W1711747931
MUKX01000011
Betaproteobacteria
Chromobacterium violaceum [MUKX]
8865
8792
-
Cys
GCA
[ENA]
¡û
>W1712081940
NHOO01000004
Betaproteobacteria
Chromobacterium violaceum [NHOO]
84868
84795
-
Cys
GCA
[ENA]
¡û
>W1712110398
NJIE01000027
Betaproteobacteria
Xenophilus sp. AP218F [NJIE]
55049
54976
-
Cys
GCA
[ENA]
¡û
>C171065561
CP017668
Betaproteobacteria
Jeongeupia sp. USM3 [CP017668]
1510416
1510489
+
Cys
GCA
-
¡û
>C171066270
CP017707
Betaproteobacteria
Chromobacterium vaccinii 21-1 [CP017707]
4185474
4185547
+
Cys
GCA
-
¡û
>C007290
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
1377958
1378031
+
Cys
GCA
[Ensembl]
¡û
>WENV180099465
NMRC01006561
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
411
338
-
Cys
GCA
[ENA]
¢þ
>WENV180736030
ODHB01003325
[ODHB] human metagenome; G_DNA_Supragingival plaque
3903
3830
-
Cys
GCA
[ENA]
¢þ
>WENV180750717
ODHS01006380
[ODHS] human metagenome; G_DNA_Supragingival plaque
3902
3829
-
Cys
GCA
[ENA]
¢þ
>WENV180814180
ODJO01009079
[ODJO] human metagenome; G_DNA_Supragingival plaque
3831
3758
-
Cys
GCA
[ENA]
¢þ
>WENV180846174
ODKT01006446
[ODKT] human metagenome; G_DNA_Supragingival plaque
94
167
+
Cys
GCA
[ENA]
¢þ
>WENV180933821
ODTR01003303
[ODTR] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV180958568
ODUL01009909
[ODUL] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV180973106
ODUW01001219
[ODUW] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV181003634
ODVX01020673
[ODVX] human metagenome; G_DNA_Supragingival plaque
1693
1620
-
Cys
GCA
[ENA]
¢þ
>WENV181019590
ODWU01007041
[ODWU] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV181029959
ODXF01013443
[ODXF] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>WENV181070365
OEAE01001054
[OEAE] human metagenome; G_DNA_Supragingival plaque
96
169
+
Cys
GCA
[ENA]
¢þ
>W141106138
AVPH01000224
Betaproteobacteria
Pseudogulbenkiania ferrooxidans EGD-HP2 [AVPH]
93657
93730
+
Cys
GCA
[ENA]
¡û
>WENV181108095
OEEI01085700
[OEEI] human metagenome; G_DNA_Supragingival plaque
119
192
+
Cys
GCA
[ENA]
¢þ
>WENV181143336
OEHM01000465
[OEHM] human metagenome; G_DNA_Supragingival plaque
20448
20375
-
Cys
GCA
[ENA]
¢þ
>WENV181152449
OEIA01001519
[OEIA] human metagenome; G_DNA_Supragingival plaque
95
168
+
Cys
GCA
[ENA]
¢þ
>WENV181179475
OEJT01005755
[OEJT] human metagenome; G_DNA_Supragingival plaque
3870
3797
-
Cys
GCA
[ENA]
¢þ
>WENV181181049
OEJU01004148
[OEJU] human metagenome; G_DNA_Supragingival plaque
4231
4158
-
Cys
GCA
[ENA]
¢þ
>WENV183508422
OMHD01001032
[OMHD] human oral metagenome; human oral
1218
1145
-
Cys
GCA
[ENA]
¢þ
>WENV183509203
OMHH01000250
[OMHH] human oral metagenome; human oral
3306
3379
+
Cys
GCA
[ENA]
¢þ
>WENV183510461
OMHO01003025
[OMHO] human oral metagenome; human oral
195
268
+
Cys
GCA
[ENA]
¢þ
>WENV170553496
CXWK01020865
[CXWK] wastewater metagenome; activated sludge
1372
1299
-
Cys
GCA
[ENA]
¢þ
>C181058463
CP022115
Betaproteobacteria
Laribacter hongkongensis HLGZ1 [CP022115]
2585523
2585450
-
Cys
GCA
-
¡û
>C181062387
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
2225012
2225085
+
Cys
GCA
-
¡û
>C181081294
CP023429
Betaproteobacteria
Neisseria weixii 10022 [CP023429]
721694
721621
-
Cys
GCA
-
¡û
>C181093180
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
1261242
1261315
+
Cys
GCA
-
¡û
>C181117129
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
3570850
3570777
-
Cys
GCA
-
¡û
>C181179637
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
2939640
2939713
+
Cys
GCA
-
¡û
>C181180311
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
4087786
4087859
+
Cys
GCA
-
¡û
>C181198244
CP031252
Betaproteobacteria
Neisseria elongata M15911 [CP031252]
1910420
1910347
-
Cys
GCA
-
¡û
>C191083727
CP031968
Betaproteobacteria
Chromobacterium rhizoryzae JP2-74 [CP031968]
3738892
3738819
-
Cys
GCA
-
¡û
>C191198999
LR134182
Betaproteobacteria
Chromobacterium violaceum NCTC9695 [LR134182]
1345796
1345869
+
Cys
GCA
-
¡û
>W141778957
JONK01000018
Betaproteobacteria
Chromobacterium haemolyticum DSM 19808 [JONK]
110307
110380
+
Cys
GCA
[ENA]
¡û
>W141779042
JONM01000002
Betaproteobacteria
Andreprevotia chitinilytica DSM 18519 [JONM]
234483
234410
-
Cys
GCA
[ENA]
¡û
>C09107060
CP001154
Betaproteobacteria
Laribacter hongkongensis HLHK9 [CP001154]
2497160
2497087
-
Cys
GCA
[Ensembl]
¡û
>W1910647347
LXRL01000155
Betaproteobacteria
Chromobacterium haemolyticum IR17 [LXRL]
118
191
+
Cys
GCA
[ENA]
¡û
>W1910803501
MTBD01000010
Betaproteobacteria
Chromobacterium amazonense 56AF [MTBD]
64468
64541
+
Cys
GCA
[ENA]
¡û
>W1810052211
PDBT02000056
Betaproteobacteria
Neisseria sp. N95_16 [PDBT]
394
321
-
Cys
GCA
[ENA]
¡û
>W1810120630
PHTC01000018
Betaproteobacteria
Neisseria sp. N177_16 [PHTC]
526
453
-
Cys
GCA
[ENA]
¡û
>W1810184699
PKBZ01000001
Betaproteobacteria
Chromobacterium violaceum ATCC 315322 [PKBZ]
3873154
3873227
+
Cys
GCA
[ENA]
¡û
>W1810227933
POXS01000005
Betaproteobacteria
Neisseria elongata C2013010062 [POXS]
66123
66050
-
Cys
GCA
[ENA]
¡û
>W1810240328
PPTF01000043
Betaproteobacteria
Chromobacterium sinusclupearum MWU13-2610 [PPTF]
35886
35813
-
Cys
GCA
[ENA]
¡û
>W1810266828
PQWB01000010
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
108370
108443
+
Cys
GCA
[ENA]
¡û
>W1810390530
PXYY01000004
Betaproteobacteria
Neisseria iguanae ATCC 51483 [PXYY]
41632
41559
-
Cys
GCA
[ENA]
¡û
>W1810483106
QARW01000002
Betaproteobacteria
Chromobacterium haemolyticum NRRL B-11053 [QARW]
4134259
4134186
-
Cys
GCA
[ENA]
¡û
>W1810483141
QARX01000001
Betaproteobacteria
Chromobacterium sp. Panama [QARX]
1015263
1015336
+
Cys
GCA
[ENA]
¡û
>W10109787
ADBF01000006
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
68323
68250
-
Cys
GCA
[ENA]
¡û
>W11112174
ADBF01000006
Betaproteobacteria
Neisseria elongata subsp. glycolytica ATCC 29315 [ADBF]
68323
68250
-
Cys
GCA
[ENA]
¡û
>W1511344544
JRFR01000008
Betaproteobacteria
Chromobacterium haemolyticum T124 [JRFR]
131808
131881
+
Cys
GCA
[ENA]
¡û
>W1511399998
JTGE01000043
Betaproteobacteria
Chromobacterium piscinae ND17 [JTGE]
51670
51743
+
Cys
GCA
[ENA]
¡û
>W1511439644
JUOC01000094
Betaproteobacteria
Neisseria bacilliformis 914_NLAC [JUOC]
104
177
+
Cys
GCA
[ENA]
¡û
>W1511456100
JVHH01000077
Betaproteobacteria
Neisseria elongata 431_NMEN [JVHH]
94490
94417
-
Cys
GCA
[ENA]
¡û
>W1511457710
JVIM01000078
Betaproteobacteria
Neisseria elongata 404_NMEN [JVIM]
94490
94417
-
Cys
GCA
[ENA]
¡û
>W1511464706
JVQC01000065
Betaproteobacteria
Neisseria bacilliformis 203_NMEN [JVQC]
9784
9857
+
Cys
GCA
[ENA]
¡û
>W1511469702
JVVT01000094
Betaproteobacteria
Neisseria elongata 1279_NMEN [JVVT]
5591
5518
-
Cys
GCA
[ENA]
¡û
>W1511480988
JWJN01000011
Betaproteobacteria
Chromobacterium subtsugae F49 [JWJN]
219528
219455
-
Cys
GCA
[ENA]
¡û
>W1511484282
JWPW01000023
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
97038
96965
-
Cys
GCA
[ENA]
¡û
>W1511525836
JYGI01000021
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
132874
132801
-
Cys
GCA
[ENA]
¡û
>W1511544154
JZJJ01000020
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
5176
5103
-
Cys
GCA
[ENA]
¡û
>W1511544283
JZJL01000019
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
47734
47661
-
Cys
GCA
[ENA]
¡û
>W1511622812
LCWO01000010
Betaproteobacteria
Chromobacterium subtsugae MWU3525 [LCWO]
121877
121950
+
Cys
GCA
[ENA]
¡û
>W1511622869
LCWP01000007
Betaproteobacteria
Chromobacterium subtsugae MWU2920 [LCWP]
171877
171950
+
Cys
GCA
[ENA]
¡û
>W1511622985
LCWQ01000019
Betaproteobacteria
Chromobacterium subtsugae MWU2576 [LCWQ]
95121
95048
-
Cys
GCA
[ENA]
¡û
>W1511640615
LDUI01000067
Betaproteobacteria
Chromobacterium sp. LK1 [LDUI]
11916
11843
-
Cys
GCA
[ENA]
¡û
>W1511640913
LDUM01000024
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
132443
132370
-
Cys
GCA
[ENA]
¡û
>W1511641261
LDUR01000004
Betaproteobacteria
Chromobacterium sp. LK11 [LDUR]
136776
136849
+
Cys
GCA
[ENA]
¡û
>W1511641452
LDUT01000021
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
214533
214606
+
Cys
GCA
[ENA]
¡û
>W1511641499
LDUU01000006
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
214536
214609
+
Cys
GCA
[ENA]
¡û
>W1511641768
LDUX01000002
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
140890
140963
+
Cys
GCA
[ENA]
¡û
>W11156222
AFAY01000057
Betaproteobacteria
Neisseria bacilliformis ATCC BAA-1200 [AFAY]
10323
10250
-
Cys
GCA
[ENA]
¡û
>W11187326
CAEE01000722
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
9963
9890
-
Cys
GCA
[ENA]
¡û
>W121126961
CAEE01000722
Betaproteobacteria
Chromobacterium haemolyticum C-61 [CAEE]
9963
9890
-
Cys
GCA
[ENA]
¡û
>W1610676041
LKIW01000132
Betaproteobacteria
Chromobacterium subtsugae violaceum [LKIW]
89180
89107
-
Cys
GCA
[ENA]
¡û
>W1610856135
LQNP01000003
Betaproteobacteria
Chromobacterium sp. F49 [LQNP]
219537
219464
-
Cys
GCA
[ENA]
¡û
>W1710563492
FOPS01000003
Betaproteobacteria
Neisseria elongata subsp. elongata [FOPS]
121017
121090
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK