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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480929 (57 seq.)
>W1710867104
LMHZ01000056
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
62166
62239
+
Cys
GCA
[ENA]
¡û
>W1710893476
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
53676
53749
+
Cys
GCA
[ENA]
¡û
>W1711413780
MGWU01000285
Betaproteobacteria
Gallionellales bacterium RBG_16_56_9 [MGWU]
1631
1558
-
Cys
GCA
[ENA]
¡û
>W1712110304
NJGV01000002
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
46852
46925
+
Cys
GCA
[ENA]
¡û
>C171021204
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2175463
2175536
+
Cys
GCA
-
¡û
>C171085392
CP018845
Betaproteobacteria
Herbaspirillum robiniae AA6 [CP018845]
1477556
1477483
-
Cys
GCA
-
¡û
>C171130531
LT671418
Betaproteobacteria
Herminiimonas arsenitoxidans AS8 [LT671418]
1073813
1073740
-
Cys
GCA
-
¡û
>C010378
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
1977634
1977561
-
Cys
GCA
[Ensembl]
¡û
>C011118
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1557818
1557891
+
Cys
GCA
[Ensembl]
¡û
>WENV180026839
FTIU01274563
[FTIU] metagenome; soil
358
285
-
Cys
GCA
[ENA]
¢þ
>WENV180029871
FTJL01010916
[FTJL] metagenome; soil
1
74
+
Cys
GCA
[ENA]
¢þ
>WENV180041181
LLBZ010059166
[LLBZ] soil metagenome; soil from tomato rhizosphere
352
279
-
Cys
GCA
[ENA]
¢þ
>WENV180247511
OBEQ010035612
[OBEQ] groundwater metagenome; groundwater
166
239
+
Cys
GCA
[ENA]
¢þ
>WENV180251536
OBEQ010373336
[OBEQ] groundwater metagenome; groundwater
2389
2316
-
Cys
GCA
[ENA]
¢þ
>WENV180256642
OBEQ010837550
[OBEQ] groundwater metagenome; groundwater
318
391
+
Cys
GCA
[ENA]
¢þ
>WENV180344810
OBLL01218842
[OBLL] soil metagenome; soil
233
160
-
Cys
GCA
[ENA]
¢þ
>WENV181401092
OFSF01054227
[OFSF] wastewater metagenome; Exp Tend VB 100WW
183
110
-
Cys
GCA
[ENA]
¢þ
>WENV183735003
PJUA01000368
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
22517
22444
-
Cys
GCA
[ENA]
¢þ
>WENV170559630
CXWL01134208
[CXWL] groundwater metagenome; biofilm material
3819
3746
-
Cys
GCA
[ENA]
¢þ
>WENV170559689
CXWL01137891
[CXWL] groundwater metagenome; biofilm material
1868
1795
-
Cys
GCA
[ENA]
¢þ
>WENV170639280
JFJP01001743
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
19952
19879
-
Cys
GCA
[ENA]
¢þ
>WENV170709312
LNFM01000254
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
83773
83700
-
Cys
GCA
[ENA]
¢þ
>WENV170996203
MWWF01174886
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
253
180
-
Cys
GCA
[ENA]
¢þ
>C191125988
CP034464
Betaproteobacteria
Undibacterium parvum DSM 23061 [CP034464]
245420
245347
-
Cys
GCA
-
¡û
>C191138914
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
1921822
1921895
+
Cys
GCA
-
¡û
>C141000174
AP013066
Betaproteobacteria
Sulfuricella denitrificans skB26 [AP013066]
1304668
1304741
+
Cys
GCA
[Ensembl]
¡û
>W1910700102
MESE01000099
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
68758
68831
+
Cys
GCA
[ENA]
¡û
>W1911572372
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
4292138
4292211
+
Cys
GCA
[ENA]
¡û
>W1911647618
QAJP01000008
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
155327
155254
-
Cys
GCA
[ENA]
¡û
>W1911802735
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2132194
2132267
+
Cys
GCA
[ENA]
¡û
>W1911802777
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1637958
1638031
+
Cys
GCA
[ENA]
¡û
>W1911802922
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
1519898
1519825
-
Cys
GCA
[ENA]
¡û
>W1810297209
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
1387769
1387842
+
Cys
GCA
[ENA]
¡û
>W1810399998
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
2122876
2122803
-
Cys
GCA
[ENA]
¡û
>W1810659410
QJKB01000001
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
73446
73519
+
Cys
GCA
[ENA]
¡û
>W1810887507
QUQN01000001
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
1378911
1378838
-
Cys
GCA
[ENA]
¡û
>C151062588
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1883451
1883524
+
Cys
GCA
[Ensembl]
¡û
>C151082355
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
2092096
2092169
+
Cys
GCA
-
¡û
>C10107803
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2201213
2201286
+
Cys
GCA
[Ensembl]
¡û
>C11105088
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
3393957
3393884
-
Cys
GCA
[Ensembl]
¡û
>W11143207
AEPR01000114
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
4612
4539
-
Cys
GCA
[ENA]
¡û
>W1511683792
LFLS01000044
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
2022
1949
-
Cys
GCA
[ENA]
¡û
>W1511683813
LFLT01000002
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
99133
99206
+
Cys
GCA
[ENA]
¡û
>C161053609
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3846119
3846046
-
Cys
GCA
[Ensembl]
¡û
>C161053631
CP013233
Betaproteobacteria
Collimonas arenae Ter10 [CP013233]
1527621
1527694
+
Cys
GCA
-
¡û
>C161053679
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1735062
1735135
+
Cys
GCA
[Ensembl]
¡û
>C161053727
CP013235
Betaproteobacteria
Collimonas arenae Ter282 [CP013235]
1527847
1527920
+
Cys
GCA
[Ensembl]
¡û
>C161053777
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
1833038
1833111
+
Cys
GCA
[Ensembl]
¡û
>W121085163
AKJA01000051
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
40384
40457
+
Cys
GCA
[ENA]
¡û
>W1610070411
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
196580
196653
+
Cys
GCA
[ENA]
¡û
>W1610729450
LMHZ01000056
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
62166
62239
+
Cys
GCA
[ENA]
¡û
>W1610753742
LNEU01000024
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
53676
53749
+
Cys
GCA
[ENA]
¡û
>W1710067784
BCTG01000001
Betaproteobacteria
Herbaspirillum chlorophenolicum NBRC 102525 [BCTG]
196580
196653
+
Cys
GCA
[ENA]
¡û
>W1710530366
FNOR01000010
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
150748
150675
-
Cys
GCA
[ENA]
¡û
>W1710556444
FOKF01000007
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
92541
92468
-
Cys
GCA
[ENA]
¡û
>W1710557517
FOLC01000002
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
123178
123251
+
Cys
GCA
[ENA]
¡û
>W1710564235
FOQI01000015
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
128017
128090
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK