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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480940 (28 seq.)
>W131155785
AQOV01000002
Gammaproteobacteria
Methylomonas sp. MK1 [AQOV]
585784
585711
-
Cys
GCA
[ENA]
¡û
>W1711129681
LUUG01000026
Gammaproteobacteria
Methylomonas methanica [LUUG]
1261
1334
+
Cys
GCA
[ENA]
¡û
>W1711129761
LUUH01000110
Gammaproteobacteria
Methylomonas methanica [LUUH]
116861
116788
-
Cys
GCA
[ENA]
¡û
>W1711129812
LUUJ01000044
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
24405
24478
+
Cys
GCA
[ENA]
¡û
>W1711129870
LUUK01000168
Gammaproteobacteria
Methylomonas koyamae [LUUK]
34207
34280
+
Cys
GCA
[ENA]
¡û
>W1711129922
LUUL01000117
Gammaproteobacteria
Methylomonas koyamae [LUUL]
31121
31048
-
Cys
GCA
[ENA]
¡û
>W131166875
ARCU01000005
Gammaproteobacteria
Methylosarcina fibrata AML-C10 [ARCU]
2432085
2432012
-
Cys
GCA
[ENA]
¡û
>W1711494835
MKMC01000007
Gammaproteobacteria
Methylomonas sp. LWB [MKMC]
91575
91648
+
Cys
GCA
[ENA]
¡û
>WENV180037241
FVAA010767574
[FVAA] soil metagenome; Soil
104
31
-
Cys
GCA
[ENA]
¢þ
>W141215979
AZUN01000001
Gammaproteobacteria
Methylomicrobium lacus LW14 [AZUN]
4334413
4334340
-
Cys
GCA
[ENA]
¡û
>W141219916
AZXK01000002
Gammaproteobacteria
Methylomonas sp. 11b [AZXK]
1078310
1078383
+
Cys
GCA
[ENA]
¡û
>WENV170577536
FSSH01000128
[FSSH] freshwater metagenome; drinking water
33041
32968
-
Cys
GCA
[ENA]
¢þ
>C181088697
CP023669
Gammaproteobacteria
Methylomonas koyamae LM6 [CP023669]
1313472
1313399
-
Cys
GCA
-
¡û
>C191105447
CP033381
Gammaproteobacteria
Methylomonas sp. LW13 [CP033381]
1098409
1098336
-
Cys
GCA
-
¡û
>W141733702
JNLB01000006
Gammaproteobacteria
Methylomonas sp. LW13 [JNLB]
145757
145830
+
Cys
GCA
[ENA]
¡û
>W141807400
JPOJ01000001
Gammaproteobacteria
Methylomicrobium agile [JPOJ]
3258056
3257983
-
Cys
GCA
[ENA]
¡û
>W1810154915
PIZT01000004
Gammaproteobacteria
Methylomonas sp. Kb3 [PIZT]
17492
17565
+
Cys
GCA
[ENA]
¡û
>C11114732
CP002738
Gammaproteobacteria
Methylomonas methanica MC09 [CP002738]
3865600
3865673
+
Cys
GCA
[Ensembl]
¡û
>W1511397860
JTDD01000015
Gammaproteobacteria
Methylomonas denitrificans FJG1 [JTDD]
11896
11823
-
Cys
GCA
[ENA]
¡û
>C161072147
CP014360
Gammaproteobacteria
Methylomonas sp. DH-1 [CP014360]
1279146
1279073
-
Cys
GCA
[Ensembl]
¡û
>C161072456
CP014476
Gammaproteobacteria
Methylomonas denitrificans FJG1 [CP014476]
3311488
3311415
-
Cys
GCA
[Ensembl]
¡û
>W1610046497
BBCK01000114
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
8305
8378
+
Cys
GCA
[ENA]
¡û
>W1610940754
LUUG01000026
Gammaproteobacteria
Methylomonas methanica [LUUG]
1261
1334
+
Cys
GCA
[ENA]
¡û
>W1610940834
LUUH01000110
Gammaproteobacteria
Methylomonas methanica [LUUH]
116861
116788
-
Cys
GCA
[ENA]
¡û
>W1610940885
LUUJ01000044
Gammaproteobacteria
Methylomonas koyamae [LUUJ]
24405
24478
+
Cys
GCA
[ENA]
¡û
>W1610940943
LUUK01000168
Gammaproteobacteria
Methylomonas koyamae [LUUK]
34207
34280
+
Cys
GCA
[ENA]
¡û
>W1610940995
LUUL01000117
Gammaproteobacteria
Methylomonas koyamae [LUUL]
31121
31048
-
Cys
GCA
[ENA]
¡û
>W1710043293
BBCK01000114
Gammaproteobacteria
Methylomonas koyamae JCM 16701 [BBCK]
8305
8378
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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