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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480983 (115 seq.)
>W1710811737
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
2136778
2136705
-
Gly
CCC
[ENA]
¡û
>W1710863630
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
636865
636938
+
Gly
CCC
[ENA]
¡û
>W1710864820
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
575956
575883
-
Gly
CCC
[ENA]
¡û
>W1710865507
LMGS01000009
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1468718
1468791
+
Gly
CCC
[ENA]
¡û
>W1710865786
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
641622
641695
+
Gly
CCC
[ENA]
¡û
>W1710865875
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
490080
490007
-
Gly
CCC
[ENA]
¡û
>W1710866101
LMHF01000009
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
381365
381438
+
Gly
CCC
[ENA]
¡û
>W1710866450
LMHM01000002
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
140503
140576
+
Gly
CCC
[ENA]
¡û
>W1710867582
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
1036501
1036428
-
Gly
CCC
[ENA]
¡û
>W1710868625
LMJF01000012
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
361227
361300
+
Gly
CCC
[ENA]
¡û
>W1710868941
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
935091
935164
+
Gly
CCC
[ENA]
¡û
>W1710869007
LMJO01000012
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
1007003
1007076
+
Gly
CCC
[ENA]
¡û
>W1711073098
LSIF01000099
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
20217
20290
+
Gly
CCC
[ENA]
¡û
>W131215863
ATVI01000010
Gammaproteobacteria
Nevskia ramosa DSM 11499 [ATVI]
30831
30758
-
Gly
CCC
[ENA]
¡û
>W131226641
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
1117030
1117103
+
Gly
CCC
[ENA]
¡û
>W131244874
CAQP01000056
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
58622
58549
-
Gly
CCC
[ENA]
¡û
>W1711386699
MEFQ01000187
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
3032
3104
+
Gly
CCC
[ENA]
¡û
>W1711424135
MIDU01000644
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_68_6 [MIDU]
2043
1970
-
Gly
CCC
[ENA]
¡û
>W1711625304
MPIO01000001
Gammaproteobacteria
Atopomonas hussainii [MPIO]
428094
428021
-
Gly
CCC
[ENA]
¡û
>W1711711526
MTAY01000083
Gammaproteobacteria
Lysobacter enzymogenes [MTAY]
21006
21079
+
Gly
CCC
[ENA]
¡û
>C171110859
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
1341541
1341614
+
Gly
CCC
-
¡û
>WENV180017172
FSWN01000021
[FSWN] metagenome; soil
569
496
-
Gly
CCC
[ENA]
¢þ
>WENV180017185
FSWP01000198
[FSWP] metagenome; soil
3142
3215
+
Gly
CCC
[ENA]
¢þ
>WENV180023885
FTIF01003315
[FTIF] metagenome; soil
20941
20868
-
Gly
CCC
[ENA]
¢þ
>WENV180025263
FTIN01049977
[FTIN] metagenome; soil
245
318
+
Gly
CCC
[ENA]
¢þ
>WENV180031262
FTJO01011381
[FTJO] metagenome; soil
33973
33900
-
Gly
CCC
[ENA]
¢þ
>WENV180032794
FTKD01001138
[FTKD] metagenome; soil
4912
4985
+
Gly
CCC
[ENA]
¢þ
>WENV180692265
OCZS010432582
[OCZS] soil metagenome; soil
315
242
-
Gly
CCC
[ENA]
¢þ
>WENV181164597
OEIR01249412
[OEIR] soil metagenome; soil
124
51
-
Gly
CCC
[ENA]
¢þ
>WENV181221763
OFCY01000061
[OFCY] metagenome; soil
135
62
-
Gly
CCC
[ENA]
¢þ
>WENV181227001
OFDN01000891
[OFDN] hot springs metagenome; Water
796
869
+
Gly
CCC
[ENA]
¢þ
>WENV181292245
OFHD01064313
[OFHD] soil metagenome; Clay
129
56
-
Gly
CCC
[ENA]
¢þ
>WENV181294127
OFHG01082449
[OFHG] soil metagenome; Clay
193
120
-
Gly
CCC
[ENA]
¢þ
>W141149626
AWZR01000007
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
158328
158255
-
Gly
CCC
[ENA]
¡û
>WENV181732352
OGQD01026341
[OGQD] human gut metagenome; faeces
204
131
-
Gly
CCC
[ENA]
¢þ
>W141282823
JAJA01000008
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
241346
241419
+
Gly
CCC
[ENA]
¡û
>WENV182941314
OKVG01001046
[OKVG] human gut metagenome; human gut
13092
13019
-
Gly
CCC
[ENA]
¢þ
>WENV182944043
OKVI01002367
[OKVI] human gut metagenome; human gut
129
202
+
Gly
CCC
[ENA]
¢þ
>WENV182954014
OKVZ01008533
[OKVZ] human gut metagenome; human gut
475
402
-
Gly
CCC
[ENA]
¢þ
>WENV183731560
PJTT01000024
[PJTT] soil metagenome; Soil (2) enriched on wood chips
114459
114386
-
Gly
CCC
[ENA]
¢þ
>WENV183731922
PJTU01000009
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
59416
59489
+
Gly
CCC
[ENA]
¢þ
>WENV183732053
PJTV01000002
[PJTV] soil metagenome; Soil enriched on wood chips: alkali lignin treatment
403280
403207
-
Gly
CCC
[ENA]
¢þ
>WENV183732301
PJTX01000001
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
80479
80552
+
Gly
CCC
[ENA]
¢þ
>WENV183733379
PJTY01001436
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
5203
5130
-
Gly
CCC
[ENA]
¢þ
>WENV183733934
PJTZ01000004
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
515355
515428
+
Gly
CCC
[ENA]
¢þ
>WENV183734729
PJUA01000001
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
143769
143842
+
Gly
CCC
[ENA]
¢þ
>WENV183735408
PJUB01000001
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
143722
143795
+
Gly
CCC
[ENA]
¢þ
>WENV183736030
PJUC01000003
[PJUC] soil metagenome; Soil enriched on filter paper
143709
143782
+
Gly
CCC
[ENA]
¢þ
>WENV183741403
PJUG01000004
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
117945
117872
-
Gly
CCC
[ENA]
¢þ
>WENV183741905
PJUH01000005
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
320942
321015
+
Gly
CCC
[ENA]
¢þ
>WENV183742809
PJUI01000249
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
7181
7254
+
Gly
CCC
[ENA]
¢þ
>WENV183742964
PJUJ01000001
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
323332
323259
-
Gly
CCC
[ENA]
¢þ
>WENV183743781
PJUK01000001
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
572510
572437
-
Gly
CCC
[ENA]
¢þ
>WENV183744513
PJUL01000002
[PJUL] feces metagenome; Chicken feces enriched on filter paper
323315
323242
-
Gly
CCC
[ENA]
¢þ
>WENV170010056
APMI01007540
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1373
1446
+
Gly
CCC
[ENA]
¢þ
>WENV170010369
APMI01015144
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2028
1955
-
Gly
CCC
[ENA]
¢þ
>WENV170012274
APMI01145079
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
511
438
-
Gly
CCC
[ENA]
¢þ
>WENV170013604
AUZY01004796
[AUZY] mine drainage metagenome; lowermost (B1B) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
264
191
-
Gly
CCC
[ENA]
¢þ
>WENV170558228
CXWL01058151
[CXWL] groundwater metagenome; biofilm material
2521
2448
-
Gly
CCC
[ENA]
¢þ
>WENV170574287
FLYM01022215
[FLYM] hot springs metagenome; Sediment
3148
3075
-
Gly
CCC
[ENA]
¢þ
>WENV170680690
LFEF01010639
[LFEF] freshwater metagenome; waterbloom
449
376
-
Gly
CCC
[ENA]
¢þ
>WENV170974800
MTKY01074974
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1909
1836
-
Gly
CCC
[ENA]
¢þ
>C181001031
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
4876742
4876669
-
Gly
CCC
-
¡û
>C181021716
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
551969
551896
-
Gly
CCC
-
¡û
>C181080837
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
3064176
3064103
-
Gly
CCC
-
¡û
>C181081787
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
1222467
1222540
+
Gly
CCC
-
¡û
>C181180357
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
99351
99424
+
Gly
CCC
-
¡û
>C181200043
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
559241
559314
+
Gly
CCC
-
¡û
>C191078896
CP031704
Gammaproteobacteria
Solimonas sp. K1W22B-7 [CP031704]
4701068
4700995
-
Gly
CCC
-
¡û
>C191181042
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
1314049
1314122
+
Gly
CCC
-
¡û
>C191183289
CP040871
Gammaproteobacteria
Thermomonas aquatica SY21 [CP040871]
2401530
2401603
+
Gly
CCC
-
¡û
>W141713899
JMTZ01000019
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
40289
40362
+
Gly
CCC
[ENA]
¡û
>W141779242
JONR01000007
Gammaproteobacteria
Nevskia soli DSM 19509 [JONR]
90165
90092
-
Gly
CCC
[ENA]
¡û
>W1911218330
NRQR01000002
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
152079
152152
+
Gly
CCC
[ENA]
¡û
>W1911283674
NTJF01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
117169
117096
-
Gly
CCC
[ENA]
¡û
>W1911283713
NTJG01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
117045
116972
-
Gly
CCC
[ENA]
¡û
>W1911283779
NTJH01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
150883
150956
+
Gly
CCC
[ENA]
¡û
>W1911283838
NTJI01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
471888
471815
-
Gly
CCC
[ENA]
¡û
>W1911770883
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
1641957
1641884
-
Gly
CCC
[ENA]
¡û
>W1810195856
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
20423
20496
+
Gly
CCC
[ENA]
¡û
>W1810858448
QTJR01000011
Gammaproteobacteria
Lysobacter soli KCTC 22011 [QTJR]
78119
78046
-
Gly
CCC
[ENA]
¡û
>W1810860370
QTSU01000001
Gammaproteobacteria
Lysobacter silvisoli zong2l5 [QTSU]
2432554
2432483
-
Gly
CCC
[ENA]
¡û
>ENV09002866
ADGC01037084
Wallaby gut metagenome MeugComb_C1
324
251
-
Gly
CCC
[ENA]
¡û
>W1511348475
JRKJ01000017
Gammaproteobacteria
Lysobacter dokdonensis DS-58 [JRKJ]
18241
18314
+
Gly
CCC
[ENA]
¡û
>W1511582563
LASZ01000006
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
42169
42242
+
Gly
CCC
[ENA]
¡û
>W1511594993
LBMI01000002
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
123476
123549
+
Gly
CCC
[ENA]
¡û
>C121016528
FP929140
Gammaproteobacteria
gamma proteobacterium HdN1 [FP929140]
906006
906079
+
Gly
CCC
[Ensembl]
¡û
>C161031537
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
1575387
1575460
+
Gly
CCC
[Ensembl]
¡û
>C161031585
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
1254369
1254442
+
Gly
CCC
[Ensembl]
¡û
>C161031635
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
1166938
1167011
+
Gly
CCC
[Ensembl]
¡û
>C161052024
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
1117345
1117418
+
Gly
CCC
[Ensembl]
¡û
>C161052116
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
2080680
2080607
-
Gly
CCC
-
¡û
>W1610027343
AVPU01000006
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
67953
67880
-
Gly
CCC
[ENA]
¡û
>W1610675834
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
2136778
2136705
-
Gly
CCC
[ENA]
¡û
>W1610725976
LMFH01000001
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
636865
636938
+
Gly
CCC
[ENA]
¡û
>W1610727166
LMGE01000011
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
575956
575883
-
Gly
CCC
[ENA]
¡û
>W1610727853
LMGS01000009
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1468718
1468791
+
Gly
CCC
[ENA]
¡û
>W1610728132
LMGY01000012
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
641622
641695
+
Gly
CCC
[ENA]
¡û
>W1610728221
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
490080
490007
-
Gly
CCC
[ENA]
¡û
>W1610728447
LMHF01000009
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
381365
381438
+
Gly
CCC
[ENA]
¡û
>W1610728796
LMHM01000002
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
140503
140576
+
Gly
CCC
[ENA]
¡û
>W1610729928
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
1036501
1036428
-
Gly
CCC
[ENA]
¡û
>W1610730971
LMJF01000012
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
361227
361300
+
Gly
CCC
[ENA]
¡û
>W1610731287
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
935091
935164
+
Gly
CCC
[ENA]
¡û
>W1610731353
LMJO01000012
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
1007003
1007076
+
Gly
CCC
[ENA]
¡û
>W1610912403
LSIF01000099
Gammaproteobacteria
Pseudoxanthomonas mexicana [LSIF]
20217
20290
+
Gly
CCC
[ENA]
¡û
>W1710023577
AVPU01000006
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
67953
67880
-
Gly
CCC
[ENA]
¡û
>W1710507754
FMVN01000004
Gammaproteobacteria
Legionella micdadei [FMVN]
37126
37199
+
Gly
CCC
[ENA]
¡û
>W1710527381
FNKZ01000001
Gammaproteobacteria
Pseudoxanthomonas sp. CF385 [FNKZ]
1047532
1047605
+
Gly
CCC
[ENA]
¡û
>W1710529738
FNOG01000002
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
707664
707591
-
Gly
CCC
[ENA]
¡û
>W1710531728
FNPT01000005
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
334835
334762
-
Gly
CCC
[ENA]
¡û
>W1710544275
FOAS01000005
Gammaproteobacteria
Atopomonas hussainii [FOAS]
137702
137775
+
Gly
CCC
[ENA]
¡û
>W1710567385
FOSS01000001
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
701291
701218
-
Gly
CCC
[ENA]
¡û
>W1710579397
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
1450309
1450236
-
Gly
CCC
[ENA]
¡û
>W1710604269
FUZV01000001
Gammaproteobacteria
Pseudoxanthomonas indica [FUZV]
1064348
1064275
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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