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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481020 (18 seq.)
>W1711342456
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
23781
23706
-
Val
TAC
[ENA]
¡û
>WENV180345911
OBLN01010541
[OBLN] sediment metagenome; sediment
2018
2093
+
Val
TAC
[ENA]
¢þ
>W141246563
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8059
8134
+
Val
TAC
[ENA]
¡û
>W141246601
CANF01000022
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
8058
8133
+
Val
TAC
[ENA]
¡û
>WENV170659034
JXWO01000103
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
12380
12454
+
Val
TAC
[ENA]
¢þ
>C181058739
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
839868
839943
+
Val
TAC
-
¡û
>C181058755
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
1349588
1349663
+
Val
TAC
-
¡û
>W1910067553
BFDZ01000006
Bacillota
Sporomusaceae bacterium FL31 [BFDZ]
211029
210954
-
Val
TAC
[ENA]
¡û
>W1910067556
BFDZ01000007
Bacillota
Sporomusaceae bacterium FL31 [BFDZ]
165935
166010
+
Val
TAC
[ENA]
¡û
>W1910067561
BFDZ01000007
Bacillota
Sporomusaceae bacterium FL31 [BFDZ]
166475
166550
+
Val
TAC
[ENA]
¡û
>W1910067602
BFDZ01000166
Bacillota
Sporomusaceae bacterium FL31 [BFDZ]
69205
69130
-
Val
TAC
[ENA]
¡û
>W1910142147
BIFV01000003
Bacillota
Sporomusaceae bacterium FL31 [BIFV]
17193
17268
+
Val
TAC
[ENA]
¡û
>W1910142160
BIFV01000010
Bacillota
Sporomusaceae bacterium FL31 [BIFV]
185863
185788
-
Val
TAC
[ENA]
¡û
>W1910142165
BIFV01000010
Bacillota
Sporomusaceae bacterium FL31 [BIFV]
185323
185248
-
Val
TAC
[ENA]
¡û
>W1910142187
BIFV01000018
Bacillota
Sporomusaceae bacterium FL31 [BIFV]
485
560
+
Val
TAC
[ENA]
¡û
>C141011722
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
235279
235354
+
Val
TAC
[Ensembl]
¡û
>C131008546
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2050196
2050121
-
Val
TAC
[Ensembl]
¡û
>C131008597
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079977
2079902
-
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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