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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481051 (64 seq.)
>W1710815585
LKKK01000011
Gammaproteobacteria
Pseudomonas sp. TTU2014-080ASC [LKKK]
387071
387146
+
Val
TAC
[ENA]
¡û
>W1710938632
LONE02000004
Gammaproteobacteria
Stutzerimonas balearica [LONE]
79087
79012
-
Val
TAC
[ENA]
¡û
>W1710938698
LONF02000006
Gammaproteobacteria
Stutzerimonas balearica [LONF]
57363
57438
+
Val
TAC
[ENA]
¡û
>W1711945803
NBMS01000005
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
162813
162888
+
Val
TAC
[ENA]
¡û
>W1711945842
NBMS01000039
Gammaproteobacteria
Pseudomonas sp. A46 [NBMS]
21586
21661
+
Val
TAC
[ENA]
¡û
>W131210498
ATKM01000005
Gammaproteobacteria
Pseudomonas sp. P818 [ATKM]
947287
947362
+
Val
TAC
[ENA]
¡û
>W131210528
ATKM01000017
Gammaproteobacteria
Pseudomonas sp. P818 [ATKM]
246
171
-
Val
TAC
[ENA]
¡û
>C017167
CP000680
Gammaproteobacteria
Pseudomonas mendocina [CP000680]
1474256
1474331
+
Val
TAC
[Ensembl]
¡û
>C017196
CP000680
Gammaproteobacteria
Pseudomonas mendocina [CP000680]
3277019
3276944
-
Val
TAC
[Ensembl]
¡û
>WENV180310648
OBJT01009275
[OBJT] soil metagenome; soil
1503
1578
+
Val
TAC
[ENA]
¢þ
>w002056
AAAU03000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
6981
7056
+
Val
TAC
[ENA]
¡û
>W141041531
AMCD02000001
Gammaproteobacteria
Pseudomonas mendocina S5.2 [AMCD]
2337102
2337177
+
Val
TAC
[ENA]
¡û
>W141041555
AMCD02000001
Gammaproteobacteria
Pseudomonas mendocina S5.2 [AMCD]
4128400
4128325
-
Val
TAC
[ENA]
¡û
>W141104353
AVOF01000247
Gammaproteobacteria
Pseudomonas sp. EGD-AK9 [AVOF]
1238
1163
-
Val
TAC
[ENA]
¡û
>WENV181416174
OGCL01058472
[OGCL] hot springs metagenome; Hot spring water
886
961
+
Val
TAC
[ENA]
¢þ
>W141319187
JBOY01000145
Gammaproteobacteria
Pseudomonas sp. RL [JBOY]
148
73
-
Val
TAC
[ENA]
¡û
>WENV170016233
AZIJ01017753
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
485
560
+
Val
TAC
[ENA]
¢þ
>WENV170779441
LZQO01000084
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
5708
5633
-
Val
TAC
[ENA]
¢þ
>W09102094
AAHH01000002
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
6981
7056
+
Val
TAC
[ENA]
¡û
>W09106322
AAUL01000008
Gammaproteobacteria
Pseudomonas mendocina ymp [AAUL]
93465
93540
+
Val
TAC
[ENA]
¡û
>W09106332
AAUL01000010
Gammaproteobacteria
Pseudomonas mendocina ymp [AAUL]
84143
84068
-
Val
TAC
[ENA]
¡û
>WENV170842205
MDSZ01235972
[MDSZ] marine metagenome; seawater
2375
2450
+
Val
TAC
[ENA]
¢þ
>WENV170965355
MTEU01001088
[MTEU] soil metagenome; naturally attenuated soil
168
93
-
Val
TAC
[ENA]
¢þ
>C181000722
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
1329945
1330020
+
Val
TAC
-
¡û
>C181000771
AP014862
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AP014862]
3843543
3843468
-
Val
TAC
-
¡û
>C181088007
CP023641
Gammaproteobacteria
Pseudomonas mendocina MAE1-K [CP023641]
4026298
4026223
-
Val
TAC
-
¡û
>C181088009
CP023641
Gammaproteobacteria
Pseudomonas mendocina MAE1-K [CP023641]
3779187
3779112
-
Val
TAC
-
¡û
>C191204327
LR134290
Gammaproteobacteria
Pseudomonas mendocina NCTC10897 [LR134290]
1467902
1467977
+
Val
TAC
-
¡û
>C191204366
LR134290
Gammaproteobacteria
Pseudomonas mendocina NCTC10897 [LR134290]
3291489
3291414
-
Val
TAC
-
¡û
>W141728781
JNHE01000017
Gammaproteobacteria
Pseudomonas oleovorans [JNHE]
76
1
-
Val
TAC
[ENA]
¡û
>W141790567
JOVT01000001
Gammaproteobacteria
Pseudomonas mendocina [JOVT]
645931
646006
+
Val
TAC
[ENA]
¡û
>W141790605
JOVT01000001
Gammaproteobacteria
Pseudomonas mendocina [JOVT]
2437235
2437160
-
Val
TAC
[ENA]
¡û
>C09100907
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
3595299
3595224
-
Val
TAC
[Ensembl]
¡û
>W1810670643
QJRX01000003
Gammaproteobacteria
Pseudomonas alcaligenes MB-090714 [QJRX]
414584
414659
+
Val
TAC
[ENA]
¡û
>C151026065
CP007511
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [CP007511]
2910659
2910584
-
Val
TAC
[Ensembl]
¡û
>W1510014599
BBQC01000003
Gammaproteobacteria
Pseudomonas mendocina NBRC 14162 [BBQC]
231438
231513
+
Val
TAC
[ENA]
¡û
>W1510014626
BBQC01000014
Gammaproteobacteria
Pseudomonas mendocina NBRC 14162 [BBQC]
20764
20839
+
Val
TAC
[ENA]
¡û
>WENV037414
AACY021855579
Marine microbial communities from Global Ocean Sampling (GOS)
611
534
-
Val
TAC
[ENA]
>C11117344
CP002620
Gammaproteobacteria
Pseudomonas mendocina NK-01 [CP002620]
1465121
1465196
+
Val
TAC
[Ensembl]
¡û
>C11117383
CP002620
Gammaproteobacteria
Pseudomonas mendocina NK-01 [CP002620]
3582326
3582251
-
Val
TAC
[Ensembl]
¡û
>W1511356362
JRUD01000026
Gammaproteobacteria
Pseudomonas flexibilis ATCC 29606 [JRUD]
39862
39787
-
Val
TAC
[ENA]
¡û
>W1511393273
JTAK01000001
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [JTAK]
417456
417531
+
Val
TAC
[ENA]
¡û
>W1511429743
JUDR01000004
Gammaproteobacteria
Stutzerimonas stutzeri YC-YH1 [JUDR]
431819
431744
-
Val
TAC
[ENA]
¡û
>W1511530401
JYKO01000033
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
317204
317279
+
Val
TAC
[ENA]
¡û
>C161051502
CP013124
Gammaproteobacteria
Pseudomonas mendocina S5.2 [CP013124]
1859217
1859292
+
Val
TAC
-
¡û
>C161051531
CP013124
Gammaproteobacteria
Pseudomonas mendocina S5.2 [CP013124]
3650519
3650444
-
Val
TAC
-
¡û
>W121064913
AJMR01000227
Gammaproteobacteria
Pseudomonas furukawaii KF707 [AJMR]
221696
221621
-
Val
TAC
[ENA]
¡û
>W121112378
ALKM01000005
Gammaproteobacteria
Pseudomonas mendocina DLHK [ALKM]
184915
184990
+
Val
TAC
[ENA]
¡û
>W121112391
ALKM01000014
Gammaproteobacteria
Pseudomonas mendocina DLHK [ALKM]
152589
152664
+
Val
TAC
[ENA]
¡û
>W1610047010
BBCY01000459
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
1055
980
-
Val
TAC
[ENA]
¡û
>W1610070281
BCTD01000013
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
41778
41703
-
Val
TAC
[ENA]
¡û
>C131014916
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
3595310
3595235
-
Val
TAC
[Ensembl]
¡û
>C131014980
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
3595298
3595223
-
Val
TAC
[Ensembl]
¡û
>W1610679682
LKKK01000011
Gammaproteobacteria
Pseudomonas sp. TTU2014-080ASC [LKKK]
387071
387146
+
Val
TAC
[ENA]
¡û
>W1610794776
LONE01000045
Gammaproteobacteria
Stutzerimonas balearica [LONE]
79087
79012
-
Val
TAC
[ENA]
¡û
>W1610794800
LONF01000002
Gammaproteobacteria
Stutzerimonas balearica [LONF]
57363
57438
+
Val
TAC
[ENA]
¡û
>W1710043615
BBCY01000459
Gammaproteobacteria
Pseudomonas flexibilis JCM 14085 [BBCY]
1055
980
-
Val
TAC
[ENA]
¡û
>W1710067654
BCTD01000013
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
41778
41703
-
Val
TAC
[ENA]
¡û
>W1710506557
FMUP01000012
Gammaproteobacteria
Pseudomonas flexibilis [FMUP]
23946
23871
-
Val
TAC
[ENA]
¡û
>W1710522925
FNHO01000002
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [FNHO]
179761
179686
-
Val
TAC
[ENA]
¡û
>W1710525243
FNJJ01000007
Gammaproteobacteria
Pseudomonas guguanensis [FNJJ]
290514
290589
+
Val
TAC
[ENA]
¡û
>W1710525257
FNJJ01000015
Gammaproteobacteria
Pseudomonas guguanensis [FNJJ]
12988
12913
-
Val
TAC
[ENA]
¡û
>W1710581957
FPKM01000004
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
37230
37305
+
Val
TAC
[ENA]
¡û
>W1710595706
FTMC01000023
Gammaproteobacteria
Pseudomonas flexibilis [FTMC]
3057
3132
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK