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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481052 (43 seq.)
>W1710808009
LKDJ01000009
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
104346
104421
+
Lys
CTT
[ENA]
¡û
>W1710862148
LMED01000025
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
182767
182692
-
Lys
CTT
[ENA]
¡û
>W1711116240
LUAW01000012
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
136873
136948
+
Lys
CTT
[ENA]
¡û
>W1711269260
LZDS01000023
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
238488
238563
+
Lys
CTT
[ENA]
¡û
>W1711333432
MBPR02000001
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
116645
116720
+
Lys
CTT
[ENA]
¡û
>W1711776963
MVKW01000002
Gammaproteobacteria
Acinetobacter sp. ANC 5600 [MVKW]
549296
549371
+
Lys
CTT
[ENA]
¡û
>W1711777037
MVKX01000003
Gammaproteobacteria
Acinetobacter amyesii ANC 4945 [MVKX]
243012
243087
+
Lys
CTT
[ENA]
¡û
>W1712003505
NEGG01000001
Gammaproteobacteria
Acinetobacter sp. ANC 5054 [NEGG]
96558
96633
+
Lys
CTT
[ENA]
¡û
>W1712003714
NEGJ01000001
Gammaproteobacteria
Acinetobacter sp. ANC 3832 [NEGJ]
207988
208063
+
Lys
CTT
[ENA]
¡û
>W1712084373
NHRM01000005
Gammaproteobacteria
Acinetobacter wuhouensis WCHA62 [NHRM]
112783
112858
+
Lys
CTT
[ENA]
¡û
>W1712084527
NHRO01000004
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 WCHA52 [NHRO]
151196
151121
-
Lys
CTT
[ENA]
¡û
>W1712084712
NHRR01000006
Gammaproteobacteria
Acinetobacter chinensis WCHA5 [NHRR]
147670
147595
-
Lys
CTT
[ENA]
¡û
>C171018775
CP012808
Gammaproteobacteria
Acinetobacter equi 114 [CP012808]
447381
447456
+
Lys
CTT
-
¡û
>W131113605
APOS01000023
Gammaproteobacteria
Acinetobacter guillouiae CIP 63.46 [APOS]
105950
106025
+
Lys
CTT
[ENA]
¡û
>W131114740
APPJ01000009
Gammaproteobacteria
Acinetobacter guillouiae NIPH 991 [APPJ]
421643
421568
-
Lys
CTT
[ENA]
¡û
>W131116087
APQD01000003
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [APQD]
75581
75506
-
Lys
CTT
[ENA]
¡û
>W131116361
APQG01000052
Gammaproteobacteria
Acinetobacter bereziniae CIP 70.12 [APQG]
400039
399964
-
Lys
CTT
[ENA]
¡û
>W131169051
AREL01000003
Gammaproteobacteria
Acinetobacter bouvetii DSM 14964 = CIP 107468 [AREL]
75586
75511
-
Lys
CTT
[ENA]
¡û
>W141238532
BBLJ01000006
Gammaproteobacteria
Acinetobacter bereziniae [BBLJ]
112400
112475
+
Lys
CTT
[ENA]
¡û
>WENV170022298
BCQK01004343
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
1394
1319
-
Lys
CTT
[ENA]
¢þ
>C181030801
CP018259
Gammaproteobacteria
Acinetobacter bereziniae XH901 [CP018259]
4027879
4027954
+
Lys
CTT
-
¡û
>C181092852
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
756993
757068
+
Lys
CTT
-
¡û
>C191000187
AP014630
Gammaproteobacteria
Acinetobacter guillouiae NBRC 110550 [AP014630]
439997
439922
-
Lys
CTT
-
¡û
>C191078996
CP031716
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [CP031716]
422751
422676
-
Lys
CTT
-
¡û
>C191084878
CP032134
Gammaproteobacteria
Acinetobacter chinensis WCHAc010005 [CP032134]
447370
447295
-
Lys
CTT
-
¡û
>C191084984
CP032143
Gammaproteobacteria
Acinetobacter sp. WCHAc010052 [CP032143]
3136261
3136336
+
Lys
CTT
-
¡û
>C191101101
CP033133
Gammaproteobacteria
Acinetobacter wuhouensis WCHAW010062 [CP033133]
468909
468834
-
Lys
CTT
-
¡û
>W141566720
JICM01000038
Gammaproteobacteria
Acinetobacter sp. ETR1 [JICM]
39723
39648
-
Lys
CTT
[ENA]
¡û
>W1910637755
LQXP01000045
Gammaproteobacteria
Acinetobacter sp. CFCC 11171 [LQXP]
263
338
+
Lys
CTT
[ENA]
¡û
>W1910637805
LQXQ01000065
Gammaproteobacteria
Acinetobacter sp. CFCC 10889 [LQXQ]
16983
16908
-
Lys
CTT
[ENA]
¡û
>W1911568924
PCQO01000007
Gammaproteobacteria
Acinetobacter sp. MYb10 [PCQO]
105228
105303
+
Lys
CTT
[ENA]
¡û
>W1510069432
CDEL01000193
Gammaproteobacteria
Acinetobacter bereziniae CHI-40-1 [CDEL]
15718
15793
+
Lys
CTT
[ENA]
¡û
>W1511310798
JPQO01000200
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
35660
35585
-
Lys
CTT
[ENA]
¡û
>W1511595615
LBNA01000047
Gammaproteobacteria
Acinetobacter sp. Ag2 [LBNA]
106080
106155
+
Lys
CTT
[ENA]
¡û
>C161089602
CP015594
Gammaproteobacteria
Acinetobacter sp. NCu2D-2 [CP015594]
263863
263788
-
Lys
CTT
-
¡û
>W1610060960
BCMB01000007
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
223
298
+
Lys
CTT
[ENA]
¡û
>W121047402
AIEI01000004
Gammaproteobacteria
Acinetobacter bereziniae LMG 1003 [AIEI]
107882
107807
-
Lys
CTT
[ENA]
¡û
>W1610672113
LKDJ01000009
Gammaproteobacteria
Acinetobacter bereziniae [LKDJ]
104346
104421
+
Lys
CTT
[ENA]
¡û
>W1610724494
LMED01000025
Gammaproteobacteria
Acinetobacter sp. Root1280 [LMED]
182767
182692
-
Lys
CTT
[ENA]
¡û
>W1610927482
LUAW01000012
Gammaproteobacteria
Acinetobacter pragensis ANC 4149 [LUAW]
136873
136948
+
Lys
CTT
[ENA]
¡û
>W1611030072
LZDS01000023
Gammaproteobacteria
Acinetobacter gandensis [LZDS]
238488
238563
+
Lys
CTT
[ENA]
¡û
>W1611065633
MBPR01000768
Gammaproteobacteria
Acinetobacter wuhouensis WCHA60 [MBPR]
116644
116719
+
Lys
CTT
[ENA]
¡û
>W1710058256
BCMB01000007
Gammaproteobacteria
Acinetobacter bouvetii [BCMB]
223
298
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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