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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481071 (94 seq.)
>W1711120569
LUGK01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
83886
83956
+
Gly
CCC
[ENA]
¡û
>W1711167787
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
9236
9166
-
Gly
CCC
[ENA]
¡û
>W1711167855
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
9182
9112
-
Gly
CCC
[ENA]
¡û
>W1711185045
LWNA01000131
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
13296
13366
+
Gly
CCC
[ENA]
¡û
>W131204309
ATBQ01000023
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
17372
17442
+
Gly
CCC
[ENA]
¡û
>W1711665951
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
729069
728999
-
Gly
CCC
[ENA]
¡û
>W1711678786
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
1092702
1092772
+
Gly
CCC
[ENA]
¡û
>C171048659
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
686943
687013
+
Gly
CCC
-
¡û
>C171074175
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
1268958
1269028
+
Gly
CCC
-
¡û
>C171075511
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1502393
1502463
+
Gly
CCC
-
¡û
>C171075638
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
290957
290886
-
Gly
CCC
-
¡û
>C171075732
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
313413
313343
-
Gly
CCC
-
¡û
>C171075818
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
650349
650279
-
Gly
CCC
-
¡û
>C171081407
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
281699
281629
-
Gly
CCC
-
¡û
>C171089479
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
271738
271668
-
Gly
CCC
-
¡û
>C171116216
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1362540
1362470
-
Gly
CCC
-
¡û
>C011436
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
284600
284530
-
Gly
CCC
[Ensembl]
¡û
>C011591
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
279068
278998
-
Gly
CCC
[Ensembl]
¡û
>W141037882
ALPY01000025
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
45626
45696
+
Gly
CCC
[ENA]
¡û
>WENV181465364
OGEP01024383
[OGEP] metagenome; Human gut stool
255
325
+
Gly
CCC
[ENA]
¢þ
>WENV181659926
OGOF01001430
[OGOF] human gut metagenome; faeces
4349
4279
-
Gly
CCC
[ENA]
¢þ
>WENV181733645
OGQE01006525
[OGQE] human gut metagenome; faeces
510
580
+
Gly
CCC
[ENA]
¢þ
>WENV181747436
OGQN01031294
[OGQN] human gut metagenome; faeces
21
91
+
Gly
CCC
[ENA]
¢þ
>WENV182293962
OHWC01039759
[OHWC] human gut metagenome; feces
288
358
+
Gly
CCC
[ENA]
¢þ
>W141228023
BALP01000046
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
7247
7177
-
Gly
CCC
[ENA]
¡û
>WENV182349905
OIBE01000292
[OIBE] human gut metagenome; feces
3976
3906
-
Gly
CCC
[ENA]
¢þ
>WENV182369941
OICS01000278
[OICS] human gut metagenome; feces
19492
19562
+
Gly
CCC
[ENA]
¢þ
>WENV182372349
OICV01023678
[OICV] human gut metagenome; feces
749
819
+
Gly
CCC
[ENA]
¢þ
>WENV182381815
OIDR01000220
[OIDR] human gut metagenome; feces
10929
10999
+
Gly
CCC
[ENA]
¢þ
>W141246047
CALZ01000083
Bacillota
Lactobacillus equicursoris 66c [CALZ]
14787
14717
-
Gly
CCC
[ENA]
¡û
>W141246056
CALZ01000092
Bacillota
Lactobacillus equicursoris 66c [CALZ]
14787
14717
-
Gly
CCC
[ENA]
¡û
>W141246131
CAMA01000128
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
3000
2930
-
Gly
CCC
[ENA]
¡û
>W141264128
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
403366
403296
-
Gly
CCC
[ENA]
¡û
>W141264921
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
235831
235761
-
Gly
CCC
[ENA]
¡û
>W141265005
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
233851
233781
-
Gly
CCC
[ENA]
¡û
>WENV183123123
OLNW01000287
[OLNW] human gut metagenome; faeces
58059
58129
+
Gly
CCC
[ENA]
¢þ
>WENV183166899
OLOY01002830
[OLOY] human gut metagenome; faeces
17
87
+
Gly
CCC
[ENA]
¢þ
>WENV183331364
OLWB01120706
[OLWB] human gut metagenome; faeces
110
180
+
Gly
CCC
[ENA]
¢þ
>WENV183772383
PPYF01016803
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3832
3762
-
Gly
CCC
[ENA]
¢þ
>WENV183785831
PPYF01298397
[PPYF] human gut metagenome; stool from patient with Crohn's disease
103956
104026
+
Gly
CCC
[ENA]
¢þ
>C181025025
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
266065
265995
-
Gly
CCC
-
¡û
>C181074573
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
608908
608838
-
Gly
CCC
-
¡û
>C181076101
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
351437
351367
-
Gly
CCC
-
¡û
>C181221133
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
272076
272006
-
Gly
CCC
-
¡û
>C191063468
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
365027
364957
-
Gly
CCC
-
¡û
>C191089958
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
688906
688976
+
Gly
CCC
-
¡û
>C191224744
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
314545
314475
-
Gly
CCC
-
¡û
>W09101811
AAGQ01000120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
1812
1882
+
Gly
CCC
[ENA]
¡û
>W1910180839
BJLK01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
1813
1743
-
Gly
CCC
[ENA]
¡û
>W1910180888
BJLM01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
145184
145255
+
Gly
CCC
[ENA]
¡û
>W1910180998
BJLO01000091
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
5366
5436
+
Gly
CCC
[ENA]
¡û
>W1910182493
BJMY01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
6079
6009
-
Gly
CCC
[ENA]
¡û
>W1910186271
CCDS01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
281421
281351
-
Gly
CCC
[ENA]
¡û
>W1910186340
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
406839
406909
+
Gly
CCC
[ENA]
¡û
>W1910186430
CCDU01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
956
886
-
Gly
CCC
[ENA]
¡û
>W1911631586
PUFG01000032
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
11523
11453
-
Gly
CCC
[ENA]
¡û
>W1911702049
QNXB01000001
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
415201
415271
+
Gly
CCC
[ENA]
¡û
>W1810000502
BEWJ01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
4234
4163
-
Gly
CCC
[ENA]
¡û
>W1810190874
PKKE01000006
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
61626
61696
+
Gly
CCC
[ENA]
¡û
>W1810445111
PZKI01000001
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
6643
6573
-
Gly
CCC
[ENA]
¡û
>W1810744644
QOVB01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
451659
451729
+
Gly
CCC
[ENA]
¡û
>W10124031
AEAT01000065
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
57169
57239
+
Gly
CCC
[ENA]
¡û
>C11112508
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
275531
275461
-
Gly
CCC
[Ensembl]
¡û
>C11112606
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
293540
293470
-
Gly
CCC
[Ensembl]
¡û
>W11130868
AEAT01000065
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
57169
57239
+
Gly
CCC
[ENA]
¡û
>W1511510301
JXRV01000064
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
94075
94145
+
Gly
CCC
[ENA]
¡û
>W1511510334
JXRV01000182
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
215
145
-
Gly
CCC
[ENA]
¡û
>W11152249
AEXU01000118
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
1225
1155
-
Gly
CCC
[ENA]
¡û
>W1511694232
LGAS01000016
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
6105
6035
-
Gly
CCC
[ENA]
¡û
>W1511698284
LGHR01000006
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
127468
127398
-
Gly
CCC
[ENA]
¡û
>C161057635
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
278652
278582
-
Gly
CCC
[Ensembl]
¡û
>W121009783
AGFO01000039
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
11064
10994
-
Gly
CCC
[ENA]
¡û
>W121010038
AGHW01000010
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
10684
10614
-
Gly
CCC
[ENA]
¡û
>W1610033090
AZCR01000026
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2632
2562
-
Gly
CCC
[ENA]
¡û
>W1610033711
AZDE01000006
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
1253
1183
-
Gly
CCC
[ENA]
¡û
>W1610034485
AZDU01000009
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
9657
9727
+
Gly
CCC
[ENA]
¡û
>W1610036645
AZFL01000028
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
45139
45209
+
Gly
CCC
[ENA]
¡û
>W1610044401
BBAN01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
10711
10641
-
Gly
CCC
[ENA]
¡û
>W1610045834
BBBW01000029
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
9621
9691
+
Gly
CCC
[ENA]
¡û
>W1610120867
CZPS01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
141831
141901
+
Gly
CCC
[ENA]
¡û
>W1610502769
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
32299
32229
-
Gly
CCC
[ENA]
¡û
>W1610527961
JQAV01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
405209
405279
+
Gly
CCC
[ENA]
¡û
>W1610529657
JQCG01000012
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
45378
45448
+
Gly
CCC
[ENA]
¡û
>W1610931766
LUGK01000007
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
83886
83956
+
Gly
CCC
[ENA]
¡û
>W1610977856
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
9236
9166
-
Gly
CCC
[ENA]
¡û
>W1610977924
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
9182
9112
-
Gly
CCC
[ENA]
¡û
>W1710030362
AZCR01000026
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
2632
2562
-
Gly
CCC
[ENA]
¡û
>W1710030889
AZDE01000006
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
1253
1183
-
Gly
CCC
[ENA]
¡û
>W1710031612
AZDU01000009
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
9657
9727
+
Gly
CCC
[ENA]
¡û
>W1710033684
AZFL01000028
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
45139
45209
+
Gly
CCC
[ENA]
¡û
>W1710042675
BBBW01000029
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [BBBW]
9621
9691
+
Gly
CCC
[ENA]
¡û
>W1710123571
CZPS01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
141831
141901
+
Gly
CCC
[ENA]
¡û
>W1710496168
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
32299
32229
-
Gly
CCC
[ENA]
¡û
>W1710631247
JQCG01000012
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
45378
45448
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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