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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481127 (112 seq.)
>A171000036
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
611807
611737
-
Gly
TCC
-
¡û
>A171000462
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
1018547
1018477
-
Gly
TCC
-
¡û
>A171003742
CP005962
Euryarchaeota
Salinarchaeum sp. Harcht-Bsk1 [CP005962]
2527206
2527136
-
Gly
TCC
-
¡û
>A171006688
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
747335
747406
+
Gly
TCC
-
¡û
>A171006730
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
775656
775727
+
Gly
TCC
-
¡û
>WENV180318234
OBKM01000150
[OBKM] metagenome; water
25136
25065
-
Gly
TCC
[ENA]
¢þ
>WENV180318351
OBKM01000461
[OBKM] metagenome; water
9904
9833
-
Gly
TCC
[ENA]
¢þ
>WENV180318364
OBKM01000542
[OBKM] metagenome; water
225
295
+
Gly
TCC
[ENA]
¢þ
>WENV180318396
OBKM01000677
[OBKM] metagenome; water
3271
3200
-
Gly
TCC
[ENA]
¢þ
>WENV180318424
OBKM01000790
[OBKM] metagenome; water
5970
6040
+
Gly
TCC
[ENA]
¢þ
>WENV180318449
OBKM01000944
[OBKM] metagenome; water
5817
5888
+
Gly
TCC
[ENA]
¢þ
>WENV180318570
OBKM01002153
[OBKM] metagenome; water
339
269
-
Gly
TCC
[ENA]
¢þ
>WENV180318631
OBKM01003132
[OBKM] metagenome; water
5116
5046
-
Gly
TCC
[ENA]
¢þ
>WENV180318651
OBKM01003598
[OBKM] metagenome; water
3532
3602
+
Gly
TCC
[ENA]
¢þ
>WENV180318665
OBKM01003958
[OBKM] metagenome; water
4064
4135
+
Gly
TCC
[ENA]
¢þ
>WENV180318771
OBKM01009215
[OBKM] metagenome; water
1
71
+
Gly
TCC
[ENA]
¢þ
>WENV180318980
OBKM01115615
[OBKM] metagenome; water
126
55
-
Gly
TCC
[ENA]
¢þ
>WENV170008998
APHM01019086
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
269
339
+
Gly
TCC
[ENA]
¢þ
>WENV170009215
APHM01021714
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4127
4057
-
Gly
TCC
[ENA]
¢þ
>WENV170009245
APHM01021841
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
8018
7948
-
Gly
TCC
[ENA]
¢þ
>At0823
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
620533
620463
-
Gly
TCC
[Ensembl]
¡û
>WENV170680381
LFCJ01009832
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6688
6618
-
Gly
TCC
[ENA]
¢þ
>WENV170681242
LFFM01000263
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
26005
26075
+
Gly
TCC
[ENA]
¢þ
>WENV170681267
LFFM01000339
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13228
13158
-
Gly
TCC
[ENA]
¢þ
>WENV170681340
LFFM01000522
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
10380
10450
+
Gly
TCC
[ENA]
¢þ
>WENV170681587
LFFM01001541
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2604
2675
+
Gly
TCC
[ENA]
¢þ
>WENV170681663
LFFM01001921
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2093
2023
-
Gly
TCC
[ENA]
¢þ
>WENV170681840
LFFM01003398
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3395
3324
-
Gly
TCC
[ENA]
¢þ
>WENV170682278
LFFM01008452
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2688
2618
-
Gly
TCC
[ENA]
¢þ
>WENV170702592
LKMJ01002784
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8766
8836
+
Gly
TCC
[ENA]
¢þ
>WENV170702825
LKMJ01004256
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1349
1419
+
Gly
TCC
[ENA]
¢þ
>WENV170703037
LKMJ01005721
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5584
5654
+
Gly
TCC
[ENA]
¢þ
>WENV170704098
LKMJ01022459
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
337
264
-
Gly
TCC
[ENA]
¢þ
>WENV170704116
LKMJ01022976
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5258
5188
-
Gly
TCC
[ENA]
¢þ
>W1910006780
BBJP01000081
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
103335
103265
-
Gly
TCC
[ENA]
¡û
>W1910193766
CVRT01000148
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
3714
3643
-
Gly
TCC
[ENA]
¡û
>W1910226792
FNBO01000012
Euryarchaeota
Halorubrum xinjiangense CGMCC 1.3527 [FNBO]
61968
62038
+
Gly
TCC
[ENA]
¡û
>W1910227046
FNIA01000007
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
141572
141502
-
Gly
TCC
[ENA]
¡û
>W1910227102
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
764814
764744
-
Gly
TCC
[ENA]
¡û
>W1910228416
FNPB01000001
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
358798
358727
-
Gly
TCC
[ENA]
¡û
>W1910228514
FNQT01000001
Euryarchaeota
Haloplanus vescus CGMCC 1.8712 [FNQT]
138794
138724
-
Gly
TCC
[ENA]
¡û
>W1910228612
FNVN01000006
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
56458
56529
+
Gly
TCC
[ENA]
¡û
>W1910230344
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
915617
915687
+
Gly
TCC
[ENA]
¡û
>W1910230396
FOPZ01000004
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
87557
87627
+
Gly
TCC
[ENA]
¡û
>W1910230658
FOYN01000002
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
903286
903216
-
Gly
TCC
[ENA]
¡û
>W1910546957
FZNK01000001
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
677675
677605
-
Gly
TCC
[ENA]
¡û
>W1910574982
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
260255
260326
+
Gly
TCC
[ENA]
¡û
>W1910617568
LIST01000004
Euryarchaeota
Halorubrum tropicale 5 [LIST]
335689
335618
-
Gly
TCC
[ENA]
¡û
>W1910749498
MJCD01000009
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
1435
1365
-
Gly
TCC
[ENA]
¡û
>W1910752230
MKFG01000001
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
137279
137349
+
Gly
TCC
[ENA]
¡û
>W1910873635
NDWV01000003
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
23330
23260
-
Gly
TCC
[ENA]
¡û
>W1910880436
NEDJ01000015
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
55666
55736
+
Gly
TCC
[ENA]
¡û
>W1910891323
NEWI01000003
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
54766
54836
+
Gly
TCC
[ENA]
¡û
>W1910891408
NEWJ01000043
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
22719
22789
+
Gly
TCC
[ENA]
¡û
>W1910911677
NHNZ01000051
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
100175
100105
-
Gly
TCC
[ENA]
¡û
>W1910911757
NHOA01000139
Euryarchaeota
Halorubrum persicum C49 [NHOA]
41035
41106
+
Gly
TCC
[ENA]
¡û
>W1910911768
NHOB01000312
Euryarchaeota
Halorubrum sp. C3 [NHOB]
4490
4561
+
Gly
TCC
[ENA]
¡û
>W1910911968
NHOV01000858
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
17937
18007
+
Gly
TCC
[ENA]
¡û
>W1910912008
NHOW01000072
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
24300
24230
-
Gly
TCC
[ENA]
¡û
>W1910912052
NHOX01000040
Euryarchaeota
Halorubrum sp. Ib24 [NHOX]
256346
256416
+
Gly
TCC
[ENA]
¡û
>W1910912094
NHOY01000106
Euryarchaeota
Halorubrum sp. Hd13 [NHOY]
33288
33218
-
Gly
TCC
[ENA]
¡û
>W1910912122
NHOZ01000051
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
4666
4596
-
Gly
TCC
[ENA]
¡û
>W1910912156
NHPA01000034
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
18348
18418
+
Gly
TCC
[ENA]
¡û
>W1910912216
NHPB01000064
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
58614
58684
+
Gly
TCC
[ENA]
¡û
>W1910912252
NHPC01000027
Euryarchaeota
Halorubrum ezzemoulense Fb21 [NHPC]
252970
253040
+
Gly
TCC
[ENA]
¡û
>W1910912280
NHPD01000037
Euryarchaeota
Halorubrum ezzemoulense Ec15 [NHPD]
242516
242446
-
Gly
TCC
[ENA]
¡û
>W1910912316
NHPE01000063
Euryarchaeota
Halorubrum sp. Eb13 [NHPE]
51687
51617
-
Gly
TCC
[ENA]
¡û
>W1910912357
NHPF01000077
Euryarchaeota
Halorubrum sp. Ea8 [NHPF]
23158
23228
+
Gly
TCC
[ENA]
¡û
>W1910912415
NHPG01000117
Euryarchaeota
Halorubrum sp. Ea1 [NHPG]
51146
51076
-
Gly
TCC
[ENA]
¡û
>W1910912446
NHPI01000155
Euryarchaeota
Halorubrum sp. E3 [NHPI]
159
88
-
Gly
TCC
[ENA]
¡û
>W1910912495
NHPJ01000025
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
5105
5034
-
Gly
TCC
[ENA]
¡û
>W1911245485
NSKC01000002
Euryarchaeota
Halorubrum salipaludis WN019 [NSKC]
496813
496743
-
Gly
TCC
[ENA]
¡û
>W1911580817
PEND01000004
Euryarchaeota
Halegenticoccus soli SYSU A9-0 [PEND]
327764
327694
-
Gly
TCC
[ENA]
¡û
>W1911696737
QMIM01000020
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
13900
13830
-
Gly
TCC
[ENA]
¡û
>W1911709171
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2619468
2619398
-
Gly
TCC
[ENA]
¡û
>W1911709621
QPLR01000001
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
643972
644042
+
Gly
TCC
[ENA]
¡û
>W1911709672
QPLS01000001
Euryarchaeota
Halorubrum sp. Atlit-28R [QPLS]
294933
294862
-
Gly
TCC
[ENA]
¡û
>W1911709730
QPLT01000004
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
42024
41954
-
Gly
TCC
[ENA]
¡û
>W1911709772
QPLU01000001
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
1442941
1442870
-
Gly
TCC
[ENA]
¡û
>W1911709777
QPLU01000001
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
478010
477939
-
Gly
TCC
[ENA]
¡û
>W1911709816
QPLV01000001
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
695878
695949
+
Gly
TCC
[ENA]
¡û
>W1911709980
QPND01000007
Euryarchaeota
Saliphagus sp. LR7 [QPND]
151257
151187
-
Gly
TCC
[ENA]
¡û
>W1911717780
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
680770
680699
-
Gly
TCC
[ENA]
¡û
>W1911717846
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
808867
808797
-
Gly
TCC
[ENA]
¡û
>W1911749413
QWGG01000004
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
414174
414244
+
Gly
TCC
[ENA]
¡û
>W1911769970
QXIJ01000003
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
151929
151999
+
Gly
TCC
[ENA]
¡û
>W1610000522
ABEB01000006
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
119702
119772
+
Gly
TCC
[ENA]
¡û
>W1610003598
AGCX01000207
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
4127
4057
-
Gly
TCC
[ENA]
¡û
>W1610003648
AGCY01000475
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
8018
7948
-
Gly
TCC
[ENA]
¡û
>W1610005928
ALWQ01000003
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
291682
291753
+
Gly
TCC
[ENA]
¡û
>W1610012816
AOIU01000026
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
62093
62163
+
Gly
TCC
[ENA]
¡û
>W1610012880
AOIV01000042
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
132962
133032
+
Gly
TCC
[ENA]
¡û
>W1610012926
AOIW01000078
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
9970
10040
+
Gly
TCC
[ENA]
¡û
>W1610012943
AOJD01000029
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
9244
9173
-
Gly
TCC
[ENA]
¡û
>W1610013010
AOJE01000070
Euryarchaeota
Halorubrum saccharovorum DSM 1137 [AOJE]
63848
63918
+
Gly
TCC
[ENA]
¡û
>W1610013022
AOJF01000027
Euryarchaeota
Halorubrum litoreum JCM 13561 [AOJF]
55253
55183
-
Gly
TCC
[ENA]
¡û
>W1610013069
AOJG01000010
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
40282
40212
-
Gly
TCC
[ENA]
¡û
>W1610013142
AOJH01000101
Euryarchaeota
Halorubrum kocurii JCM 14978 [AOJH]
153
83
-
Gly
TCC
[ENA]
¡û
>W1610013150
AOJI01000017
Euryarchaeota
Halorubrum aidingense JCM 13560 [AOJI]
386004
385934
-
Gly
TCC
[ENA]
¡û
>W1610013198
AOJJ01000039
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
75763
75693
-
Gly
TCC
[ENA]
¡û
>W1610013276
AOJK01000073
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
136765
136694
-
Gly
TCC
[ENA]
¡û
>W1610013308
AOJL01000032
Euryarchaeota
Halorubrum coriense DSM 10284 [AOJL]
135762
135833
+
Gly
TCC
[ENA]
¡û
>W1610013349
AOJM01000060
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
74507
74436
-
Gly
TCC
[ENA]
¡û
>W1610013390
AOJN01000049
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
57570
57641
+
Gly
TCC
[ENA]
¡û
>W1610013446
AOJO01000059
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
13558
13488
-
Gly
TCC
[ENA]
¡û
>W1610014210
AOLS01000015
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
79821
79751
-
Gly
TCC
[ENA]
¡û
>W1610019190
ARPZ01000536
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
7148
7078
-
Gly
TCC
[ENA]
¡û
>W1610024338
ATXS01000013
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
591
521
-
Gly
TCC
[ENA]
¡û
>W1610024380
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
454736
454666
-
Gly
TCC
[ENA]
¡û
>W1610083258
CBVY010000008
Euryarchaeota
Halorubrum sp. AJ67 [CBVY]
115211
115281
+
Gly
TCC
[ENA]
¡û
>W1610675802
LKIR01000141
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
25010
24940
-
Gly
TCC
[ENA]
¡û
>W1610779638
LOAJ01000001
Euryarchaeota
Halorubrum aethiopicum SAH-A6 [LOAJ]
1416399
1416328
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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