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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481130 (76 seq.)
>A171001129
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2325863
2325934
+
Pro
GGG
-
¡û
>A171001287
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
266777
266848
+
Pro
GGG
-
¡û
>A171002482
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
235441
235370
-
Pro
GGG
-
¡û
>A171003041
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
883510
883581
+
Pro
GGG
-
¡û
>A171003081
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
155720
155791
+
Pro
GGG
-
¡û
>A171003183
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1786187
1786115
-
Pro
GGG
-
¡û
>A171003487
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
3378265
3378194
-
Pro
GGG
-
¡û
>A171006923
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
3221080
3221151
+
Pro
GGG
-
¡û
>A171006956
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1359823
1359893
+
Pro
GGG
-
¡û
>WENV180318563
OBKM01002020
[OBKM] metagenome; water
4294
4222
-
Pro
GGG
[ENA]
¢þ
>WENV170679539
LFCJ01000016
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
81815
81742
-
Pro
GGG
[ENA]
¢þ
>WENV170679880
LFCJ01001218
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
17583
17656
+
Pro
GGG
[ENA]
¢þ
>WENV170679999
LFCJ01002456
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
12878
12807
-
Pro
GGG
[ENA]
¢þ
>WENV170681493
LFFM01001115
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
3240
3312
+
Pro
GGG
[ENA]
¢þ
>WENV170703046
LKMJ01005808
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3617
3687
+
Pro
GGG
[ENA]
¢þ
>WENV170703061
LKMJ01006119
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11110
11181
+
Pro
GGG
[ENA]
¢þ
>WENV170703267
LKMJ01008719
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9098
9169
+
Pro
GGG
[ENA]
¢þ
>WENV170703619
LKMJ01014618
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
7079
7009
-
Pro
GGG
[ENA]
¢þ
>WENV170703680
LKMJ01015362
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5248
5178
-
Pro
GGG
[ENA]
¢þ
>WENV170704075
LKMJ01021927
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
2624
2553
-
Pro
GGG
[ENA]
¢þ
>PL191000888
CP031306
Euryarchaeota
Natronorubrum bangense JCM 10635 plasmid:unnamed1 (CP031306)
244491
244421
-
Pro
GGG
[ENA]
¡û
>W1910011018
BDJH01000002
Euryarchaeota
Salella cibi CBA1134 [BDJH]
2358651
2358579
-
Pro
GGG
[ENA]
¡û
>W1910226671
FMZP01000001
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
239614
239685
+
Pro
GGG
[ENA]
¡û
>W1910226901
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
1184483
1184413
-
Pro
GGG
[ENA]
¡û
>W1910227063
FNIA01000017
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
42674
42744
+
Pro
GGG
[ENA]
¡û
>W1910227160
FNLC01000008
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
53661
53731
+
Pro
GGG
[ENA]
¡û
>W1910229318
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
317714
317785
+
Pro
GGG
[ENA]
¡û
>W1910229827
FOFD01000010
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
76783
76854
+
Pro
GGG
[ENA]
¡û
>W1910229886
FOIC01000002
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
84413
84343
-
Pro
GGG
[ENA]
¡û
>W1910229943
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
58388
58459
+
Pro
GGG
[ENA]
¡û
>W1910230241
FOKW01000003
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
340160
340089
-
Pro
GGG
[ENA]
¡û
>W1910230439
FORO01000007
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
22854
22783
-
Pro
GGG
[ENA]
¡û
>W1910340507
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
302711
302781
+
Pro
GGG
[ENA]
¡û
>W1910340536
FTNR01000003
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
40765
40835
+
Pro
GGG
[ENA]
¡û
>W1910568516
JDTG01000014
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
625920
625991
+
Pro
GGG
[ENA]
¡û
>W1910569050
JHUT02000001
Euryarchaeota
Natrinema mahii H13 [JHUT]
881364
881293
-
Pro
GGG
[ENA]
¡û
>W1910572701
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
102017
101946
-
Pro
GGG
[ENA]
¡û
>W1910575873
JROF01000007
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
81806
81735
-
Pro
GGG
[ENA]
¡û
>W1910646109
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
668020
668091
+
Pro
GGG
[ENA]
¡û
>W1910657545
MASN01000001
Euryarchaeota
Natrialba sp. SSL1 [MASN]
95333
95404
+
Pro
GGG
[ENA]
¡û
>W1910826107
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
333011
332940
-
Pro
GGG
[ENA]
¡û
>W1911433969
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
367863
367934
+
Pro
GGG
[ENA]
¡û
>W1911572217
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
2456671
2456741
+
Pro
GGG
[ENA]
¡û
>W1911591330
PKKI01000010
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
21792
21721
-
Pro
GGG
[ENA]
¡û
>W1911718006
QQTY01000005
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
276421
276491
+
Pro
GGG
[ENA]
¡û
>W1610001056
ACIT01000003
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
482640
482569
-
Pseudo
GGG
[ENA]
¡û
>W1610004068
AGFZ01000113
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
39924
39995
+
Pseudo
GGG
[ENA]
¡û
>W1610004112
AGIM01000013
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
127611
127682
+
Pseudo
GGG
[ENA]
¡û
>W1610004144
AGIN01000014
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
49868
49939
+
Pseudo
GGG
[ENA]
¡û
>W1610005361
AJVG01000002
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
323153
323081
-
Pseudo
GGG
[ENA]
¡û
>W1610011705
AOHS01000009
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
36290
36361
+
Pseudo
GGG
[ENA]
¡û
>W1610011897
AOHW01000006
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
198205
198275
+
Pseudo
GGG
[ENA]
¡û
>W1610011928
AOHX01000025
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
33964
34034
+
Pseudo
GGG
[ENA]
¡û
>W1610012011
AOHY01000056
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
14975
15045
+
Pseudo
GGG
[ENA]
¡û
>W1610012032
AOHZ01000041
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
154240
154169
-
Pseudo
GGG
[ENA]
¡û
>W1610012083
AOIA01000114
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
19769
19698
-
Pseudo
GGG
[ENA]
¡û
>W1610012144
AOIB01000037
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
28583
28513
-
Pseudo
GGG
[ENA]
¡û
>W1610012177
AOIC01000086
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
52271
52342
+
Pseudo
GGG
[ENA]
¡û
>W1610012205
AOID01000027
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
102962
103033
+
Pseudo
GGG
[ENA]
¡û
>W1610012240
AOIE01000010
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
176493
176422
-
Pseudo
GGG
[ENA]
¡û
>W1610012304
AOII01000067
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
696
624
-
Pseudo
GGG
[ENA]
¡û
>W1610012337
AOIJ01000042
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
10780
10708
-
Pseudo
GGG
[ENA]
¡û
>W1610012381
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
99802
99873
+
Pseudo
GGG
[ENA]
¡û
>W1610012428
AOIL01000042
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
138655
138726
+
Pseudo
GGG
[ENA]
¡û
>W1610012456
AOIM01000009
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
22237
22308
+
Pseudo
GGG
[ENA]
¡û
>W1610012524
AOIN01000067
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
56967
57038
+
Pseudo
GGG
[ENA]
¡û
>W1610012555
AOIO01000023
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
32729
32658
-
Pseudo
GGG
[ENA]
¡û
>W1610012620
AOIP01000033
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
28638
28567
-
Pseudo
GGG
[ENA]
¡û
>W1610012700
AOIR01000063
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
202202
202273
+
Pseudo
GGG
[ENA]
¡û
>W1610012736
AOIS01000044
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
3025
2954
-
Pseudo
GGG
[ENA]
¡û
>W1610012778
AOIT01000030
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
68954
69024
+
Pseudo
GGG
[ENA]
¡û
>W1610014432
AOLZ01000048
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
74087
74158
+
Pseudo
GGG
[ENA]
¡û
>W1610014469
AOMA01000092
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
165
236
+
Pseudo
GGG
[ENA]
¡û
>W1610019036
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
696264
696194
-
Pseudo
GGG
[ENA]
¡û
>W1610083001
CBMA010000054
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
62139
62068
-
Pseudo
GGG
[ENA]
¡û
>W1610671371
LKCV01000056
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
1798
1868
+
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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