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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481138 (51 seq.)
>A171002643
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1227605
1227534
-
Pro
GGG
-
¡û
>A171003976
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1239038
1238967
-
Pro
GGG
-
¡û
>A171004181
CP007060
Euryarchaeota
Halobacterium sp. DL1 [CP007060]
2228022
2228093
+
Pro
GGG
-
¡û
>A171005812
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2878323
2878252
-
Pro
GGG
-
¡û
>A171006861
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2552401
2552472
+
Pro
GGG
-
¡û
>A171007453
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
1941355
1941284
-
Pro
GGG
-
¡û
>WENV180318280
OBKM01000272
[OBKM] metagenome; water
1258
1188
-
Pro
GGG
[ENA]
¢þ
>WENV180318546
OBKM01001711
[OBKM] metagenome; water
70
140
+
Pro
GGG
[ENA]
¢þ
>WENV180318702
OBKM01005439
[OBKM] metagenome; water
1799
1870
+
Pro
GGG
[ENA]
¢þ
>WENV170008853
APHM01010366
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2591
2662
+
Pro
GGG
[ENA]
¢þ
>WENV170008938
APHM01016177
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
526
597
+
Pro
GGG
[ENA]
¢þ
>WENV170008961
APHM01017058
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
509
582
+
Pro
GGG
[ENA]
¢þ
>WENV170009019
APHM01020467
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
2888
2817
-
Pro
GGG
[ENA]
¢þ
>WENV170009038
APHM01020753
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
4025
4095
+
Pro
GGG
[ENA]
¢þ
>At0773
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
533936
533866
-
Pro
GGG
[Ensembl]
¡û
>WENV170702308
LKMJ01001248
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
73
2
-
Pro
GGG
[ENA]
¢þ
>WENV170703105
LKMJ01006648
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
10826
10896
+
Pro
GGG
[ENA]
¢þ
>WENV170703847
LKMJ01017385
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
55
126
+
Pro
GGG
[ENA]
¢þ
>W1910175086
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
409459
409530
+
Pro
GGG
[ENA]
¡û
>W1910226723
FNBK01000003
Euryarchaeota
Halorientalis regularis IBRC-M 10760 [FNBK]
275282
275353
+
Pro
GGG
[ENA]
¡û
>W1910226867
FNFC01000005
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
37529
37600
+
Pro
GGG
[ENA]
¡û
>W1910228383
FNOF01000004
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
246712
246783
+
Pro
GGG
[ENA]
¡û
>W1910229682
FOCX01000001
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
203739
203668
-
Pro
GGG
[ENA]
¡û
>W1910583049
JXAO01000011
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
15852
15781
-
Pro
GGG
[ENA]
¡û
>W1910617603
LIUF01000003
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
129298
129227
-
Pro
GGG
[ENA]
¡û
>W1911709477
QPLN01000005
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
105254
105183
-
Pro
GGG
[ENA]
¡û
>W1911709613
QPLQ01000005
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
120962
121033
+
Pro
GGG
[ENA]
¡û
>W1911749386
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
486212
486283
+
Pro
GGG
[ENA]
¡û
>W1911770030
QXIK01000005
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
180618
180689
+
Pro
GGG
[ENA]
¡û
>W1610003635
AGCY01000185
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
2591
2662
+
Pseudo
GGG
[ENA]
¡û
>W1610003640
AGCY01000370
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
2888
2817
-
Pseudo
GGG
[ENA]
¡û
>W1610004186
AGIR01000001
Euryarchaeota
Halobacterium sp. DL1 [AGIR]
1130458
1130387
-
Pseudo
GGG
[ENA]
¡û
>W1610012825
AOIU01000033
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
27479
27552
+
Pseudo
GGG
[ENA]
¡û
>W1610014142
AOLQ01000040
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
84733
84804
+
Pseudo
GGG
[ENA]
¡û
>W1610014188
AOLR01000018
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
369306
369377
+
Pseudo
GGG
[ENA]
¡û
>W1610014241
AOLS01000078
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
21017
21088
+
Pseudo
GGG
[ENA]
¡û
>W1610014270
AOLW01000015
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
526779
526850
+
Pseudo
GGG
[ENA]
¡û
>W1610014311
AOLX01000014
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
536857
536928
+
Pseudo
GGG
[ENA]
¡û
>W1610014390
AOLY01000037
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
45458
45529
+
Pseudo
GGG
[ENA]
¡û
>W1610019068
ARPW01000461
Euryarchaeota
halophilic archaeon J07HX5 [ARPW]
1593
1523
-
Pseudo
GGG
[ENA]
¡û
>W1610061876
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
1971931
1971860
-
Pseudo
GGG
[ENA]
¡û
>W1610061928
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
550747
550674
-
Pseudo
GGG
[ENA]
¡û
>W1610061949
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
2417549
2417619
+
Pseudo
GGG
[ENA]
¡û
>W1610085075
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
700233
700162
-
Pseudo
GGG
[ENA]
¡û
>W1610085102
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
759391
759462
+
Pseudo
GGG
[ENA]
¡û
>W1610085141
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
802216
802287
+
Pseudo
GGG
[ENA]
¡û
>W1610085180
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
801221
801292
+
Pseudo
GGG
[ENA]
¡û
>W1610085241
CEMQ01000001
Euryarchaeota
Halobacterium hubeiense JI20-7 [CEMQ]
1757561
1757490
-
Pseudo
GGG
[ENA]
¡û
>W1610085274
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
700303
700232
-
Pseudo
GGG
[ENA]
¡û
>W1610085323
CEMZ01000001
Euryarchaeota
Halobacterium hubeiense JI20-8 [CEMZ]
1714146
1714075
-
Pseudo
GGG
[ENA]
¡û
>W1610881028
LRHL01000023
Euryarchaeota
Haloarcula sp. K1 [LRHL]
112911
112841
-
Pseudo
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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