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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481157 (10 seq.)
>C024108
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1490273
1490345
+
Ala
CGC
[Ensembl]
¡û
>WENV170659844
JXWS01006383
[JXWS] soil metagenome; rice field; elevated CO2
84
11
-
Ala
CGC
[ENA]
¢þ
>C181192097
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1494544
1494617
+
Ala
CGC
-
¡û
>C191072361
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1455004
1455077
+
Ala
CGC
-
¡û
>C191072405
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1458961
1459034
+
Ala
CGC
-
¡û
>C191072451
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1566849
1566922
+
Ala
CGC
-
¡û
>C191072495
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1482512
1482585
+
Ala
CGC
-
¡û
>C191072540
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1524331
1524404
+
Ala
CGC
-
¡û
>W1910870043
NCQX01000018
Rhodothermota
Salinibacter ruber SP273 [NCQX]
32669
32596
-
Ala
CGC
[ENA]
¡û
>C131018227
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1549700
1549773
+
Ala
CGC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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