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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481164 (10 seq.)
>C024133
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2181372
2181297
-
Trp
CCA
[Ensembl]
¡û
>WENV170659964
JXWS01060130
[JXWS] soil metagenome; rice field; elevated CO2
63
138
+
Trp
CCA
[ENA]
¢þ
>C181192122
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2191400
2191325
-
Trp
CCA
-
¡û
>C191072386
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
2201654
2201579
-
Trp
CCA
-
¡û
>C191072430
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2187012
2186937
-
Trp
CCA
-
¡û
>C191072476
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2284888
2284813
-
Trp
CCA
-
¡û
>C191072520
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2171987
2171912
-
Trp
CCA
-
¡û
>C191072565
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2238833
2238758
-
Trp
CCA
-
¡û
>W1910870067
NCQX01000092
Rhodothermota
Salinibacter ruber SP273 [NCQX]
13688
13613
-
Trp
CCA
[ENA]
¡û
>C131018252
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2258747
2258672
-
Trp
CCA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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