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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481185 (19 seq.)
>A171003986
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
1395539
1395609
+
Cys
GCA
-
¡û
>A171007310
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1123753
1123823
+
Cys
GCA
-
¡û
>A171007362
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
2058114
2058184
+
Cys
GCA
-
¡û
>A171007418
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
979156
979086
-
Cys
GCA
-
¡û
>A171007659
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
1083732
1083802
+
Cys
GCA
-
¡û
>WENV181229637
OFEK01000013
[OFEK] activated sludge metagenome; Anaerobic digester
130510
130440
-
Cys
GCA
[ENA]
¢þ
>WENV170008019
AMZC01000271
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1631
1561
-
Cys
GCA
[ENA]
¢þ
>WENV170021455
BBPF01012389
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
971
900
-
Cys
GCA
[ENA]
¢þ
>WENV170651558
JRYF01075115
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
415
345
-
Cys
GCA
[ENA]
¢þ
>WENV170668848
LAHQ01066061
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
295
225
-
Cys
GCA
[ENA]
¢þ
>WENV170670689
LAHT01125724
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
395
325
-
Cys
GCA
[ENA]
¢þ
>WENV170677334
LDZT01005059
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3249
3319
+
Cys
GCA
[ENA]
¢þ
>W1910574915
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
527949
528019
+
Cys
GCA
[ENA]
¡û
>W1910574943
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
529143
529213
+
Cys
GCA
[ENA]
¡û
>W1910575092
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
1214734
1214804
+
Cys
GCA
[ENA]
¡û
>W1610006233
AMGN01000027
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
673
743
+
Pseudo
GCA
[ENA]
¡û
>W1610011033
AMPO01000010
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
82492
82422
-
Pseudo
GCA
[ENA]
¡û
>W1610049147
BBES01000005
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
40564
40634
+
Pseudo
GCA
[ENA]
¡û
>W1610613888
LGGL01000166
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
3249
3319
+
Pseudo
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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