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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481201 (27 seq.)
>W131099106
AOSR01000023
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
89658
89731
+
Cys
GCA
[ENA]
¡û
>W1711081644
LSSV01000049
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139956
139883
-
Cys
GCA
[ENA]
¡û
>W1711082315
LSTT01000353
Actinomycetota
Dietzia cinnamea [LSTT]
147603
147530
-
Cys
GCA
[ENA]
¡û
>W1711139724
LVFF01000009
Actinomycetota
Dietzia maris [LVFF]
1889
1962
+
Cys
GCA
[ENA]
¡û
>W1711187599
LWPP01000387
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
3263
3190
-
Cys
GCA
[ENA]
¡û
>W1711351203
MDCG01000005
Actinomycetota
Dietzia alimentaria [MDCG]
7831
7904
+
Cys
GCA
[ENA]
¡û
>C171044564
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
1921793
1921720
-
Cys
GCA
-
¡û
>WENV181169459
OEIV010002645
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
6762
6689
-
Cys
GCA
[ENA]
¢þ
>WENV170973176
MTKY01016944
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
75
148
+
Cys
GCA
[ENA]
¢þ
>C181017350
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
1880415
1880486
+
Cys
GCA
-
¡û
>C181017399
CP015453
Actinomycetota
Dietzia psychralcaliphila ILA-1 [CP015453]
1960451
1960524
+
Cys
GCA
-
¡û
>C181107052
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
1900956
1901029
+
Cys
GCA
-
¡û
>C181148326
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
3094187
3094258
+
Cys
GCA
-
¡û
>W1911278993
NTGA01000001
Actinomycetota
Dietzia natronolimnaea S-XJ-1 [NTGA]
151740
151667
-
Cys
GCA
[ENA]
¡û
>W1911422566
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
469145
469074
-
Cys
GCA
[ENA]
¡û
>W1810463937
PZZY01000003
Actinomycetota
Dietzia psychralcaliphila DSM 44820 [PZZY]
267416
267343
-
Cys
GCA
[ENA]
¡û
>W1810722017
QNTT01000036
Actinomycetota
Dietzia maris SST1 [QNTT]
24745
24672
-
Cys
GCA
[ENA]
¡û
>W11109736
ACZI01000077
Actinomycetota
Segniliparus rugosus ATCC BAA-974 [ACZI]
40981
41054
+
Cys
GCA
[ENA]
¡û
>W11139514
AEKG01000091
Actinomycetota
Dietzia cinnamea P4 [AEKG]
14473
14400
-
Cys
GCA
[ENA]
¡û
>W11178778
AGFF01000023
Actinomycetota
Dietzia alimentaria 72 [AGFF]
307112
307039
-
Cys
GCA
[ENA]
¡û
>W1610069423
BCSL01000094
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
1339
1412
+
Cys
GCA
[ENA]
¡û
>W1610069890
BCSW01000003
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
1340
1413
+
Cys
GCA
[ENA]
¡û
>W1610920479
LSSV01000049
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
139956
139883
-
Cys
GCA
[ENA]
¡û
>W1610921100
LSTT01000353
Actinomycetota
Dietzia cinnamea [LSTT]
147603
147530
-
Cys
GCA
[ENA]
¡û
>W1610950732
LVFF01000009
Actinomycetota
Dietzia maris [LVFF]
1889
1962
+
Cys
GCA
[ENA]
¡û
>W1710066796
BCSL01000094
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
1339
1412
+
Cys
GCA
[ENA]
¡û
>W1710067263
BCSW01000003
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
1340
1413
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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