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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481229 (108 seq.)
>W1711326722
MBFW01000063
Gammaproteobacteria
Shewanella algae [MBFW]
66906
66831
-
Glu
TTC
[ENA]
¡û
>W1711326727
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
966
891
-
Glu
TTC
[ENA]
¡û
>W1711326728
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
678
603
-
Glu
TTC
[ENA]
¡û
>W1711326729
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
541
466
-
Glu
TTC
[ENA]
¡û
>W1711326731
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
318
243
-
Glu
TTC
[ENA]
¡û
>W1711326732
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
182
107
-
Glu
TTC
[ENA]
¡û
>C019830
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2667710
2667635
-
Glu
TTC
[Ensembl]
¡û
>C019831
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2667598
2667523
-
Glu
TTC
[Ensembl]
¡û
>C019832
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2667359
2667284
-
Glu
TTC
[Ensembl]
¡û
>C019833
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2667247
2667172
-
Glu
TTC
[Ensembl]
¡û
>C019835
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2667024
2666949
-
Glu
TTC
[Ensembl]
¡û
>C019837
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2666724
2666649
-
Glu
TTC
[Ensembl]
¡û
>C019839
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
2666501
2666426
-
Glu
TTC
[Ensembl]
¡û
>W141227985
BALO01000063
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
11040
11115
+
Glu
TTC
[ENA]
¡û
>W141227986
BALO01000063
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
11328
11403
+
Glu
TTC
[ENA]
¡û
>WENV170658526
JTFP01133560
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
169
244
+
Glu
TTC
[ENA]
¢þ
>C191015513
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4713508
4713433
-
Glu
TTC
-
¡û
>C191015514
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4713371
4713296
-
Glu
TTC
-
¡û
>C191015515
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4713083
4713008
-
Glu
TTC
-
¡û
>C191015517
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4712859
4712784
-
Glu
TTC
-
¡û
>C191015518
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4712722
4712647
-
Glu
TTC
-
¡û
>C191015520
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
4712498
4712423
-
Glu
TTC
-
¡û
>C191017633
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216611
2216536
-
Glu
TTC
-
¡û
>C191017634
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216479
2216404
-
Glu
TTC
-
¡û
>C191017635
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216347
2216272
-
Glu
TTC
-
¡û
>C191017636
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2216109
2216034
-
Glu
TTC
-
¡û
>C191017638
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215886
2215811
-
Glu
TTC
-
¡û
>C191017640
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215586
2215511
-
Glu
TTC
-
¡û
>C191017642
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
2215286
2215211
-
Glu
TTC
-
¡û
>C191107856
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3506221
3506146
-
Glu
TTC
-
¡û
>C191107857
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3506085
3506010
-
Glu
TTC
-
¡û
>C191107858
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3505797
3505722
-
Glu
TTC
-
¡û
>C191107860
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3505574
3505499
-
Glu
TTC
-
¡û
>C191107861
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3505437
3505362
-
Glu
TTC
-
¡û
>C191107863
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3505213
3505138
-
Glu
TTC
-
¡û
>W09102831
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16655
16580
-
Glu
TTC
[ENA]
¡û
>W09102832
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16543
16468
-
Glu
TTC
[ENA]
¡û
>W09102833
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16304
16229
-
Glu
TTC
[ENA]
¡û
>W09102834
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
16192
16117
-
Glu
TTC
[ENA]
¡û
>W09102836
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15969
15894
-
Glu
TTC
[ENA]
¡û
>W09102838
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15669
15594
-
Glu
TTC
[ENA]
¡û
>W09102840
AAIN01000049
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
15446
15371
-
Glu
TTC
[ENA]
¡û
>W141801995
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122502
122427
-
Glu
TTC
[ENA]
¡û
>W141801996
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122388
122313
-
Glu
TTC
[ENA]
¡û
>W141801997
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122274
122199
-
Glu
TTC
[ENA]
¡û
>W141801998
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122160
122085
-
Glu
TTC
[ENA]
¡û
>W141801999
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
122046
121971
-
Glu
TTC
[ENA]
¡û
>W141802000
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121932
121857
-
Glu
TTC
[ENA]
¡û
>W141802001
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121818
121743
-
Glu
TTC
[ENA]
¡û
>W141802002
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121678
121603
-
Glu
TTC
[ENA]
¡û
>W141802003
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121564
121489
-
Glu
TTC
[ENA]
¡û
>W141802005
JPEO01000008
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
121344
121269
-
Glu
TTC
[ENA]
¡û
>W1910644991
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
115387
115312
-
Glu
TTC
[ENA]
¡û
>W1910644992
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
115250
115175
-
Glu
TTC
[ENA]
¡û
>W1910644993
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
114961
114886
-
Glu
TTC
[ENA]
¡û
>W1910644995
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
114738
114663
-
Glu
TTC
[ENA]
¡û
>W1910645114
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
159298
159373
+
Glu
TTC
[ENA]
¡û
>W1910645188
LVDK01000007
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
201198
201123
-
Glu
TTC
[ENA]
¡û
>W1910645210
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
203
128
-
Glu
TTC
[ENA]
¡û
>W1910645293
LVDU01000007
Gammaproteobacteria
Shewanella algae YHL [LVDU]
199954
199879
-
Glu
TTC
[ENA]
¡û
>W1910905595
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
217990
218065
+
Glu
TTC
[ENA]
¡û
>W1910905596
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218127
218202
+
Glu
TTC
[ENA]
¡û
>W1910905597
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218264
218339
+
Glu
TTC
[ENA]
¡û
>W1910905599
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218488
218563
+
Glu
TTC
[ENA]
¡û
>W1910905600
NGVS01000033
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
218626
218701
+
Glu
TTC
[ENA]
¡û
>W1910927023
NIJK01000005
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
341
266
-
Glu
TTC
[ENA]
¡û
>W1910927024
NIJK01000005
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
205
130
-
Glu
TTC
[ENA]
¡û
>W1910927223
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
614
539
-
Glu
TTC
[ENA]
¡û
>W1910927224
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
478
403
-
Glu
TTC
[ENA]
¡û
>W1910927225
NIJL01000043
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
342
267
-
Glu
TTC
[ENA]
¡û
>W1810585837
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
246625
246550
-
Glu
TTC
[ENA]
¡û
>W1810585838
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
246489
246414
-
Glu
TTC
[ENA]
¡û
>W1810585839
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
246200
246125
-
Glu
TTC
[ENA]
¡û
>W1810585841
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
245976
245901
-
Glu
TTC
[ENA]
¡û
>W1810585842
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
245839
245764
-
Glu
TTC
[ENA]
¡û
>W1810585844
QFDC01000003
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
245615
245540
-
Glu
TTC
[ENA]
¡û
>W1810671709
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
19556
19481
-
Glu
TTC
[ENA]
¡û
>W1810671710
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
19267
19192
-
Glu
TTC
[ENA]
¡û
>W1810671711
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18674
18599
-
Glu
TTC
[ENA]
¡û
>W1810671713
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18299
18224
-
Glu
TTC
[ENA]
¡û
>W1810671715
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
18075
18000
-
Glu
TTC
[ENA]
¡û
>W1810671716
QJSY01000044
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
17635
17560
-
Glu
TTC
[ENA]
¡û
>W1810786561
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
123037
122962
-
Glu
TTC
[ENA]
¡û
>W1810786562
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122884
122809
-
Glu
TTC
[ENA]
¡û
>W1810786563
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122731
122656
-
Glu
TTC
[ENA]
¡û
>W1810786564
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122578
122503
-
Glu
TTC
[ENA]
¡û
>W1810786566
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
122224
122149
-
Glu
TTC
[ENA]
¡û
>W1810786668
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
826
751
-
Glu
TTC
[ENA]
¡û
>W1810786670
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
457
382
-
Glu
TTC
[ENA]
¡û
>W1810786672
QRCS01000111
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
179
104
-
Glu
TTC
[ENA]
¡û
>W1510077707
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
844233
844158
-
Glu
TTC
[ENA]
¡û
>W1510077708
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
844096
844021
-
Glu
TTC
[ENA]
¡û
>W1510077709
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
843807
843732
-
Glu
TTC
[ENA]
¡û
>W1510077711
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
843583
843508
-
Glu
TTC
[ENA]
¡û
>W1511306476
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
206844
206919
+
Glu
TTC
[ENA]
¡û
>W1511306477
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
207133
207208
+
Glu
TTC
[ENA]
¡û
>W1511306479
JPMA01000002
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
207357
207432
+
Glu
TTC
[ENA]
¡û
>W1511477920
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134611
134686
+
Glu
TTC
[ENA]
¡û
>W1511477921
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134747
134822
+
Glu
TTC
[ENA]
¡û
>W1511477922
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
134883
134958
+
Glu
TTC
[ENA]
¡û
>W1511477923
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
135019
135094
+
Glu
TTC
[ENA]
¡û
>W1511477924
JWGX01000013
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
135306
135381
+
Glu
TTC
[ENA]
¡û
>W1610042106
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
92498
92573
+
Glu
TTC
[ENA]
¡û
>W1610042113
BAXN01000028
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
31
106
+
Glu
TTC
[ENA]
¡û
>W1610042136
BAXN01000075
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
105
180
+
Glu
TTC
[ENA]
¡û
>W1710039200
BAXN01000020
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
92498
92573
+
Glu
TTC
[ENA]
¡û
>W1710039207
BAXN01000028
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
31
106
+
Glu
TTC
[ENA]
¡û
>W1710039230
BAXN01000075
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
105
180
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK