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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481247 (76 seq.)
>W131095471
AOOP01000006
Gammaproteobacteria
Dickeya solani MK10 [AOOP]
365188
365115
-
Gln
CTG
[ENA]
¡û
>W131095541
AOOQ01000006
Gammaproteobacteria
Dickeya solani MK16 [AOOQ]
365258
365185
-
Gln
CTG
[ENA]
¡û
>W131187871
ASAB01000008
Gammaproteobacteria
Pectobacterium atrosepticum CFBP 6276 [ASAB]
850395
850468
+
Gln
CTG
[ENA]
¡û
>W1711509661
MKZW02000001
Gammaproteobacteria
[Kluyvera] intestini [MKZW]
1202049
1202122
+
Gln
CTG
[ENA]
¡û
>W1711795418
MWPR01000014
Gammaproteobacteria
Kluyvera intermedia [MWPR]
59662
59735
+
Gln
CTG
[ENA]
¡û
>C008286
BX950851
Gammaproteobacteria
Pectobacterium atrosepticum [BX950851]
1496662
1496589
-
Gln
CTG
[Ensembl]
¡û
>WENV180187176
OAWV01031585
[OAWV] human gut metagenome; faeces
315
388
+
Gln
CTG
[ENA]
¢þ
>WENV180504644
OCAN01019368
[OCAN] human gut metagenome; faeces
244
317
+
Gln
CTG
[ENA]
¢þ
>W141050983
AMWE01000002
Gammaproteobacteria
Dickeya solani D s0432-1 [AMWE]
365489
365416
-
Gln
CTG
[ENA]
¡û
>W141051280
AMYI01000010
Gammaproteobacteria
Dickeya solani RNS 08.23.3.1.A [AMYI]
366656
366583
-
Gln
CTG
[ENA]
¡û
>W141055393
AONU01000026
Gammaproteobacteria
Dickeya solani IPO 2222 [AONU]
187955
187882
-
Gln
CTG
[ENA]
¡û
>W141055580
AONX01000073
Gammaproteobacteria
Dickeya solani GBBC 2040 [AONX]
28870
28797
-
Gln
CTG
[ENA]
¡û
>W141147757
AWXH01000002
Gammaproteobacteria
Serratia sp. ATCC 39006 [AWXH]
1740867
1740794
-
Gln
CTG
[ENA]
¡û
>W141147759
AWXH01000002
Gammaproteobacteria
Serratia sp. ATCC 39006 [AWXH]
1740661
1740588
-
Gln
CTG
[ENA]
¡û
>WENV181798943
OGRX01003625
[OGRX] human gut metagenome; fecal sample 2 from infant 8
557
484
-
Gln
CTG
[ENA]
¢þ
>WENV181801761
OGSC01000043
[OGSC] human gut metagenome; fecal sample 8 from infant 5
381
454
+
Gln
CTG
[ENA]
¢þ
>WENV181806504
OGSL01000026
[OGSL] human gut metagenome; fecal sample 6 from infant 5
130735
130662
-
Gln
CTG
[ENA]
¢þ
>WENV181814211
OGTF01000521
[OGTF] human gut metagenome; fecal sample 5 from infant 5
360
433
+
Gln
CTG
[ENA]
¢þ
>WENV181837135
OGVK01003386
[OGVK] freshwater metagenome; freshwater
1020
947
-
Gln
CTG
[ENA]
¢þ
>WENV182408525
OIFF01000024
[OIFF] human gut metagenome; stool
113242
113169
-
Gln
CTG
[ENA]
¢þ
>WENV182412071
OIFS01000022
[OIFS] human gut metagenome; stool
113242
113169
-
Gln
CTG
[ENA]
¢þ
>WENV182413029
OIFX01000033
[OIFX] human gut metagenome; stool
59773
59846
+
Gln
CTG
[ENA]
¢þ
>WENV182863931
OKPX01000050
[OKPX] human gut metagenome; human gut
27489
27416
-
Gln
CTG
[ENA]
¢þ
>WENV182951253
OKVU01000048
[OKVU] human gut metagenome; human gut
79379
79306
-
Gln
CTG
[ENA]
¢þ
>WENV182953120
OKVX01005983
[OKVX] human gut metagenome; human gut
938
1011
+
Gln
CTG
[ENA]
¢þ
>WENV182953300
OKVY01000053
[OKVY] human gut metagenome; human gut
383
456
+
Gln
CTG
[ENA]
¢þ
>WENV182966138
OKWV01000017
[OKWV] human gut metagenome; stool
68259
68332
+
Gln
CTG
[ENA]
¢þ
>WENV183065436
OLIJ01000078
[OLIJ] metagenome; faeces
831
904
+
Gln
CTG
[ENA]
¢þ
>WENV170001353
AGFS01013296
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
163
90
-
Gln
CTG
[ENA]
¢þ
>C181022029
CP016928
Gammaproteobacteria
Dickeya solani RNS 08.23.3.1.A [CP016928]
4169283
4169210
-
Gln
CTG
-
¡û
>C181025636
CP017453
Gammaproteobacteria
Dickeya solani D s0432-1 [CP017453]
1409147
1409220
+
Gln
CTG
-
¡û
>C181025711
CP017454
Gammaproteobacteria
Dickeya solani PPO 9019 [CP017454]
1402368
1402441
+
Gln
CTG
-
¡û
>C181109352
CP024956
Gammaproteobacteria
Pectobacterium atrosepticum 36A [CP024956]
1510334
1510261
-
Gln
CTG
-
¡û
>C181112942
CP025084
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025084]
4019260
4019333
+
Gln
CTG
-
¡û
>C181112944
CP025084
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025084]
4019466
4019539
+
Gln
CTG
-
¡û
>C181113016
CP025085
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025085]
4019259
4019332
+
Gln
CTG
-
¡û
>C181113018
CP025085
Gammaproteobacteria
Serratia sp. ATCC 39006 [CP025085]
4019465
4019538
+
Gln
CTG
-
¡û
>C181128739
CP026192
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH2 [CP026192]
5461913
5461986
+
Gln
CTG
-
¡û
>C181128807
CP026193
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH1 [CP026193]
2763121
2763194
+
Gln
CTG
-
¡û
>C181128944
CP026197
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH3 [CP026197]
2648406
2648333
-
Gln
CTG
-
¡û
>C181147787
CP027225
Gammaproteobacteria
Phytobacter sp. SCO41 [CP027225]
4005655
4005728
+
Gln
CTG
-
¡û
>C191004893
AP018756
Gammaproteobacteria
Phytobacter sp. MRY16-398 [AP018756]
4222018
4222091
+
Gln
CTG
-
¡û
>C191028390
CP024710
Gammaproteobacteria
Dickeya solani IFB0223 [CP024710]
1345038
1344965
-
Gln
CTG
-
¡û
>C191028465
CP024711
Gammaproteobacteria
Dickeya solani IFB 0099 [CP024711]
1348188
1348115
-
Gln
CTG
-
¡û
>W141814940
JQHK01000002
Gammaproteobacteria
Pectobacterium atrosepticum [JQHK]
310230
310157
-
Gln
CTG
[ENA]
¡û
>W141815226
JQHO01000002
Gammaproteobacteria
Pectobacterium atrosepticum [JQHO]
328860
328933
+
Gln
CTG
[ENA]
¡û
>W1910000511
AODV01000023
Gammaproteobacteria
Pectobacterium atrosepticum HAI2-SCRI1043 [AODV]
211717
211790
+
Gln
CTG
[ENA]
¡û
>W1911019344
NLNS01000010
Gammaproteobacteria
Escherichia coli MOD1-EC5498 [NLNS]
85181
85108
-
Gln
CTG
[ENA]
¡û
>W1911580610
PEMZ01000003
Gammaproteobacteria
Dickeya solani IFB_0221 [PEMZ]
321052
321125
+
Gln
CTG
[ENA]
¡û
>W1911580671
PENA01000003
Gammaproteobacteria
Dickeya solani IFB_0158 [PENA]
366173
366100
-
Gln
CTG
[ENA]
¡û
>W1810053375
PDDK01000003
Gammaproteobacteria
Pectobacterium atrosepticum PB72 [PDDK]
188721
188794
+
Gln
CTG
[ENA]
¡û
>W1810064505
PDVN01000001
Gammaproteobacteria
Dickeya solani F012 [PDVN]
386821
386894
+
Gln
CTG
[ENA]
¡û
>W1810100706
PGOJ01000001
Gammaproteobacteria
Dickeya solani F012 [PGOJ]
386821
386894
+
Gln
CTG
[ENA]
¡û
>W1810423642
PYTY01000016
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
62722
62649
-
Gln
CTG
[ENA]
¡û
>W1810580167
QESY01000046
Gammaproteobacteria
Pectobacterium atrosepticum SS26 [QESY]
6249
6176
-
Gln
CTG
[ENA]
¡û
>W1810658497
QJJI01000010
Gammaproteobacteria
Grimontella sp. AG753 [QJJI]
118199
118126
-
Gln
CTG
[ENA]
¡û
>W1810785323
QRBM01000005
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
105023
104950
-
Gln
CTG
[ENA]
¡û
>C151033594
CP007744
Gammaproteobacteria
Pectobacterium atrosepticum JG10-08 [CP007744]
1482893
1482820
-
Gln
CTG
[Ensembl]
¡û
>C151044543
CP009125
Gammaproteobacteria
Pectobacterium atrosepticum 21A [CP009125]
1477906
1477833
-
Gln
CTG
[Ensembl]
¡û
>C151085198
CP011602
Gammaproteobacteria
Phytobacter ursingii CAV1151 [CP011602]
3029929
3030002
+
Gln
CTG
[Ensembl]
¡û
>WENV11101425
AGFS01013296
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
163
90
-
Gln
CTG
[ENA]
¡û
>W1511499416
JXAF01000045
Gammaproteobacteria
Enterobacter sp. Bisph2 [JXAF]
363
436
+
Gln
CTG
[ENA]
¡û
>W1511510180
JXRS01000075
Gammaproteobacteria
Dickeya solani IFB 0099 [JXRS]
315865
315938
+
Gln
CTG
[ENA]
¡û
>C161083779
CP015137
Gammaproteobacteria
Dickeya solani IPO 2222 [CP015137]
3508519
3508446
-
Gln
CTG
-
¡û
>W1610005838
ALIV01000029
Gammaproteobacteria
Pectobacterium atrosepticum ICMP 1526 [ALIV]
1220590
1220517
-
Gln
CTG
[ENA]
¡û
>W1610548140
JWLR01000002
Gammaproteobacteria
Dickeya solani [JWLR]
321055
321128
+
Gln
CTG
[ENA]
¡û
>W1610548209
JWLS01000001
Gammaproteobacteria
Dickeya solani [JWLS]
1186172
1186245
+
Gln
CTG
[ENA]
¡û
>W1610548294
JWLT01000004
Gammaproteobacteria
Dickeya solani [JWLT]
1186187
1186260
+
Gln
CTG
[ENA]
¡û
>W1610548530
JWMJ01000014
Gammaproteobacteria
Dickeya solani [JWMJ]
54390
54463
+
Gln
CTG
[ENA]
¡û
>W1710005599
ALIV01000029
Gammaproteobacteria
Pectobacterium atrosepticum ICMP 1526 [ALIV]
1220590
1220517
-
Gln
CTG
[ENA]
¡û
>W1710559983
FONB01000002
Gammaproteobacteria
Phytobacter palmae S29 [FONB]
67886
67959
+
Gln
CTG
[ENA]
¡û
>W1710604818
FVZI01000014
Gammaproteobacteria
Enterobacter sp. NFR05 [FVZI]
68298
68371
+
Gln
CTG
[ENA]
¡û
>W1710651516
JWLR01000002
Gammaproteobacteria
Dickeya solani [JWLR]
321055
321128
+
Gln
CTG
[ENA]
¡û
>W1710651585
JWLS01000001
Gammaproteobacteria
Dickeya solani [JWLS]
1186172
1186245
+
Gln
CTG
[ENA]
¡û
>W1710651670
JWLT01000004
Gammaproteobacteria
Dickeya solani [JWLT]
1186187
1186260
+
Gln
CTG
[ENA]
¡û
>W1710651906
JWMJ01000014
Gammaproteobacteria
Dickeya solani [JWMJ]
54390
54463
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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