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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481247 (8 seq.)
>WENV180970078
ODUU01001328
[ODUU] human metagenome; G_DNA_Stool
9617
9543
-
Phe
GAA
[ENA]
¡û
>WENV181133487
OEGF01000222
[OEGF] human metagenome; G_DNA_Stool
40647
40719
+
Phe
GAA
[ENA]
¡û
>WENV183723591
PDYJ01002306
[PDYJ] gut metagenome; fecal pellets
417913
417985
+
Phe
GAA
[ENA]
¡û
>WENV183723780
PDYJ01003139
[PDYJ] gut metagenome; fecal pellets
16640
16568
-
Phe
GAA
[ENA]
¡û
>W1810321516
PUBW01000022
Bacteroidota
Muribaculum intestinale DSM 100746 [PUBW]
22304
22232
-
Phe
GAA
[ENA]
¡û
>W2110121336
CAJSYI010000017
Bacteroidota
Muribaculaceae bacterium [CAJSYI]
1788
1860
+
Phe
GAA
[ENA]
¡û
>W2110121455
CAJSYL010000079
Bacteroidota
Duncaniella muris [CAJSYL]
3469
3397
-
Phe
GAA
[ENA]
¡û
>W2110127583
CAJTGC010000072
Bacteroidota
Duncaniella muris [CAJTGC]
6548
6620
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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