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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481287 (38 seq.)
>W1710811731
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
767057
767130
+
Cys
GCA
[ENA]
¡û
>W1710854684
LLXS01000001
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
3326
3253
-
Cys
GCA
[ENA]
¡û
>W1710872154
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
543391
543318
-
Cys
GCA
[ENA]
¡û
>W1711386559
MEFO01000009
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
142229
142156
-
Cys
GCA
[ENA]
¡û
>W1711506435
MKWK01000004
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
411367
411440
+
Cys
GCA
[ENA]
¡û
>C171050491
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
4009368
4009441
+
Cys
GCA
-
¡û
>WENV183738778
PJUE01000188
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
16603
16676
+
Cys
GCA
[ENA]
¢þ
>WENV183740193
PJUF01000671
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
5594
5521
-
Cys
GCA
[ENA]
¢þ
>WENV183742197
PJUH01001228
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
1756
1829
+
Cys
GCA
[ENA]
¢þ
>W141401113
JDSQ01000002
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
63800
63873
+
Cys
GCA
[ENA]
¡û
>WENV170689915
LFRM01317664
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
450
523
+
Cys
GCA
[ENA]
¢þ
>C181011050
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
1174329
1174256
-
Cys
GCA
-
¡û
>C181021689
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
2997686
2997759
+
Cys
GCA
-
¡û
>C181039125
CP019797
Gammaproteobacteria
Stenotrophomonas acidaminiphila SUNEO [CP019797]
1522699
1522772
+
Cys
GCA
-
¡û
>C181080823
CP023406
Gammaproteobacteria
Luteimonas chenhongjianii 100111 [CP023406]
1670962
1671035
+
Cys
GCA
-
¡û
>W1911218359
NRQR01000025
Gammaproteobacteria
Luteimonas sp. 4-12 [NRQR]
34718
34791
+
Cys
GCA
[ENA]
¡û
>W1911283683
NTJF01000005
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
206472
206399
-
Cys
GCA
[ENA]
¡û
>W1911283727
NTJG01000005
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
194272
194199
-
Cys
GCA
[ENA]
¡û
>W1911283763
NTJH01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
67088
67161
+
Cys
GCA
[ENA]
¡û
>W1911283824
NTJI01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
380711
380638
-
Cys
GCA
[ENA]
¡û
>W1511582559
LASZ01000005
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
56135
56062
-
Cys
GCA
[ENA]
¡û
>C161047145
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
1711046
1711119
+
Cys
GCA
[Ensembl]
¡û
>C161070333
CP014274
Gammaproteobacteria
Stenotrophomonas sp. KCTC 12332 YM1 [CP014274]
2469473
2469400
-
Cys
GCA
[Ensembl]
¡û
>W1610042781
BAZI01000114
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4539
4612
+
Cys
GCA
[ENA]
¡û
>W1610586772
LDJG01000061
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
432
359
-
Cys
GCA
[ENA]
¡û
>W1610586890
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
135725
135652
-
Cys
GCA
[ENA]
¡û
>W1610586919
LDJJ01000007
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
40045
39972
-
Cys
GCA
[ENA]
¡û
>W1610587275
LDJO01000094
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
3393
3320
-
Cys
GCA
[ENA]
¡û
>W1610587322
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
5881
5954
+
Cys
GCA
[ENA]
¡û
>W1610675828
LKIT01000002
Gammaproteobacteria
Xanthomonas sp. Mitacek01 [LKIT]
767057
767130
+
Cys
GCA
[ENA]
¡û
>W1610716961
LLXS01000001
Gammaproteobacteria
Stenotrophomonas pictorum maltophilia [LLXS]
3326
3253
-
Cys
GCA
[ENA]
¡û
>W1610734500
LMLT01000006
Gammaproteobacteria
Stenotrophomonas sp. Leaf70 [LMLT]
543391
543318
-
Cys
GCA
[ENA]
¡û
>W1710039941
BAZI01000114
Gammaproteobacteria
Stenotrophomonas pictorum JCM 9942 [BAZI]
4539
4612
+
Cys
GCA
[ENA]
¡û
>W1710705902
LDJG01000061
Gammaproteobacteria
Stenotrophomonas nitritireducens [LDJG]
432
359
-
Cys
GCA
[ENA]
¡û
>W1710706020
LDJI01000019
Gammaproteobacteria
Stenotrophomonas humi [LDJI]
135725
135652
-
Cys
GCA
[ENA]
¡û
>W1710706049
LDJJ01000007
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
40045
39972
-
Cys
GCA
[ENA]
¡û
>W1710706405
LDJO01000094
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
3393
3320
-
Cys
GCA
[ENA]
¡û
>W1710706452
LDJP01000077
Gammaproteobacteria
Stenotrophomonas daejeonensis [LDJP]
5881
5954
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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