This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481310 (99 seq.)
>W1711174332
LWED01000033
Gammaproteobacteria
Shewanella baltica [LWED]
3735
3808
+
Gly
TCC
[ENA]
¡û
>W1711326712
MBFW01000058
Gammaproteobacteria
Shewanella algae [MBFW]
44809
44736
-
Gly
TCC
[ENA]
¡û
>W1711360875
MDKA01000020
Gammaproteobacteria
Shewanella algae [MDKA]
29138
29211
+
Gly
TCC
[ENA]
¡û
>W1711621638
MPDG02000012
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
3667
3740
+
Gly
TCC
[ENA]
¡û
>W1711934453
NAJR01000025
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
3690
3763
+
Gly
TCC
[ENA]
¡û
>W1712080489
NGZL01000121
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
387
314
-
Gly
TCC
[ENA]
¡û
>WENV012629
AACY020343356
Marine microbial communities from Global Ocean Sampling (GOS)
3690
3763
+
Gly
TCC
[ENA]
>C019766
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
233339
233412
+
Gly
TCC
[Ensembl]
¡û
>C020661
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
4880090
4880017
-
Gly
TCC
[Ensembl]
¡û
>C020908
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
179022
179095
+
Gly
TCC
[Ensembl]
¡û
>C022204
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
224715
224788
+
Gly
TCC
[Ensembl]
¡û
>C022307
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
210818
210891
+
Gly
TCC
[Ensembl]
¡û
>C022408
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
206463
206536
+
Gly
TCC
[Ensembl]
¡û
>C022508
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
171786
171859
+
Gly
TCC
[Ensembl]
¡û
>C022912
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
227006
227079
+
Gly
TCC
[Ensembl]
¡û
>C023269
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
4380461
4380388
-
Gly
TCC
[Ensembl]
¡û
>w026307
ABAU01000039
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
42315
42388
+
Gly
TCC
[ENA]
¡û
>w024949
AAZC01000107
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
999
929
-
Gly
TCC
[ENA]
¡û
>w022901
AAWY01000027
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
1324
1254
-
Gly
TCC
[ENA]
¡û
>w007661
AAIU01000007
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
1225
1155
-
Gly
TCC
[ENA]
¡û
>WENV180310817
OBJT01029000
[OBJT] soil metagenome; soil
503
576
+
Gly
TCC
[ENA]
¢þ
>W141171204
AXZL01000052
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
16720
16647
-
Gly
TCC
[ENA]
¡û
>C08008604
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
227444
227517
+
Gly
TCC
[Ensembl]
¡û
>W141227815
BALL01000094
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
3939
4012
+
Gly
TCC
[ENA]
¡û
>W141227896
BALN01000013
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
131165
131238
+
Gly
TCC
[ENA]
¡û
>W141227990
BALO01000075
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
3782
3855
+
Gly
TCC
[ENA]
¡û
>C08008710
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
230659
230732
+
Gly
TCC
[Ensembl]
¡û
>W141276235
JADP01000054
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
713
640
-
Gly
TCC
[ENA]
¡û
>C181016901
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
369048
368975
-
Gly
TCC
-
¡û
>C181057549
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
3846115
3846188
+
Gly
TCC
-
¡û
>C181062938
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
218759
218832
+
Gly
TCC
-
¡û
>C181074996
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
2164206
2164279
+
Gly
TCC
-
¡û
>C181164478
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
2121214
2121287
+
Gly
TCC
-
¡û
>C181165448
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
2398755
2398682
-
Gly
TCC
-
¡û
>C181167910
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
4585083
4585010
-
Gly
TCC
-
¡û
>C191015561
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
1350939
1350866
-
Gly
TCC
-
¡û
>C191017604
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
4392475
4392548
+
Gly
TCC
-
¡û
>W141520060
JGVI01000046
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
3612
3685
+
Gly
TCC
[ENA]
¡û
>C191107795
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
499072
499145
+
Gly
TCC
-
¡û
>C191155861
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
97901
97974
+
Gly
TCC
-
¡û
>C191187028
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
352218
352291
+
Gly
TCC
-
¡û
>C191205204
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
2305703
2305776
+
Gly
TCC
-
¡û
>C191206415
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
226701
226774
+
Gly
TCC
-
¡û
>W09102845
AAIN01000060
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
1859
1786
-
Gly
TCC
[ENA]
¡û
>W09104092
AALH01000092
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
1748
1675
-
Gly
TCC
[ENA]
¡û
>W09104296
AALN01000016
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
844
771
-
Gly
TCC
[ENA]
¡û
>W09104625
AALX01000061
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
5357
5430
+
Gly
TCC
[ENA]
¡û
>W141802030
JPEO01000029
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
19894
19967
+
Gly
TCC
[ENA]
¡û
>C09109194
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
4831305
4831232
-
Gly
TCC
[Ensembl]
¡û
>W1910617431
LIRM01000009
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
3622
3695
+
Gly
TCC
[ENA]
¡û
>W1910645061
LVCY01000062
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
433
360
-
Gly
TCC
[ENA]
¡û
>W1910645146
LVDH01000018
Gammaproteobacteria
Shewanella algae AC [LVDH]
25915
25842
-
Gly
TCC
[ENA]
¡û
>W1910645230
LVDK01000031
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
664
591
-
Gly
TCC
[ENA]
¡û
>W1910645313
LVDU01000023
Gammaproteobacteria
Shewanella algae YHL [LVDU]
433
360
-
Gly
TCC
[ENA]
¡û
>W1910905556
NGVS01000021
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
4003
4076
+
Gly
TCC
[ENA]
¡û
>W1910913826
NHRI01000036
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
3696
3769
+
Gly
TCC
[ENA]
¡û
>W1910927020
NIJK01000004
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
382
309
-
Gly
TCC
[ENA]
¡û
>W1910927158
NIJL01000016
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
3883
3956
+
Gly
TCC
[ENA]
¡û
>W1910927159
NIJL01000016
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
3991
4064
+
Gly
TCC
[ENA]
¡û
>W1910927231
NIJM01000004
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
356
283
-
Gly
TCC
[ENA]
¡û
>W1911581920
PGVH01000032
Gammaproteobacteria
Shewanella sp. OPT22 [PGVH]
386
313
-
Gly
TCC
[ENA]
¡û
>W1911812341
QZEI01000034
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
38262
38189
-
Gly
TCC
[ENA]
¡û
>W1810073421
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
1205097
1205024
-
Gly
TCC
[ENA]
¡û
>W1810423047
PYSG01000003
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
192587
192514
-
Gly
TCC
[ENA]
¡û
>W1810585894
QFDC01000041
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
36890
36817
-
Gly
TCC
[ENA]
¡û
>W1810587777
QFLG01000061
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
391
318
-
Gly
TCC
[ENA]
¡û
>W1810671651
QJSY01000006
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
136796
136869
+
Gly
TCC
[ENA]
¡û
>W1810721610
QNSC01000026
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
42457
42384
-
Gly
TCC
[ENA]
¡û
>W1810786535
QRCS01000001
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
5603
5676
+
Gly
TCC
[ENA]
¡û
>W1510077648
CDQH01000002
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
526
453
-
Gly
TCC
[ENA]
¡û
>W1510077652
CDQH01000005
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
4321
4394
+
Gly
TCC
[ENA]
¡û
>W10119090
ADVH01000070
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
313
240
-
Gly
TCC
[ENA]
¡û
>W10126086
AECY01000020
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
4157
4230
+
Gly
TCC
[ENA]
¡û
>W10126436
AEDE01000021
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
3805
3878
+
Gly
TCC
[ENA]
¡û
>W1511306547
JPMA01000021
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
50974
50901
-
Gly
TCC
[ENA]
¡û
>C11119365
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
268306
268379
+
Gly
TCC
[Ensembl]
¡û
>C11119507
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
4996192
4996119
-
Gly
TCC
[Ensembl]
¡û
>C11119564
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
229519
229592
+
Gly
TCC
[Ensembl]
¡û
>W1511403516
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
14306
14379
+
Gly
TCC
[ENA]
¡û
>C11121497
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
174559
174632
+
Gly
TCC
[Ensembl]
¡û
>W11125262
ADVH01000070
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
313
240
-
Gly
TCC
[ENA]
¡û
>W1511477973
JWGX01000068
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
21184
21257
+
Gly
TCC
[ENA]
¡û
>W11133347
AECY01000020
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
4157
4230
+
Gly
TCC
[ENA]
¡û
>W11133697
AEDE01000021
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
3805
3878
+
Gly
TCC
[ENA]
¡û
>W11169868
AFOZ01000004
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
3653
3726
+
Gly
TCC
[ENA]
¡û
>W11178503
AGEX01000019
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
17391
17318
-
Gly
TCC
[ENA]
¡û
>W121103357
AKZL01000158
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
3839
3912
+
Gly
TCC
[ENA]
¡û
>W1610042133
BAXN01000049
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
3888
3961
+
Gly
TCC
[ENA]
¡û
>W1610072097
BCUO01000012
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
127371
127444
+
Gly
TCC
[ENA]
¡û
>W1610077893
BCZT01000108
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3681
3754
+
Gly
TCC
[ENA]
¡û
>W1610617843
LGYY01000121
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
3707
3780
+
Gly
TCC
[ENA]
¡û
>W1610982645
LWED01000033
Gammaproteobacteria
Shewanella baltica [LWED]
3735
3808
+
Gly
TCC
[ENA]
¡û
>W1710039227
BAXN01000049
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
3888
3961
+
Gly
TCC
[ENA]
¡û
>W1710069299
BCUO01000012
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
127371
127444
+
Gly
TCC
[ENA]
¡û
>W1710075451
BCZT01000108
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3681
3754
+
Gly
TCC
[ENA]
¡û
>W1710597973
FTNN01000030
Gammaproteobacteria
Shewanella morhuae [FTNN]
3565
3638
+
Gly
TCC
[ENA]
¡û
>W1710692436
JZWJ01000014
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
3731
3804
+
Gly
TCC
[ENA]
¡û
>W1710706684
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
1499890
1499817
-
Gly
TCC
[ENA]
¡û
>W1710744018
LGYY01000121
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
3707
3780
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK