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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481340 (27 seq.)
>W1710889321
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
813321
813392
+
Trp
CCA
[ENA]
¡û
>W131180776
ARNJ01000065
Bacteroidota
Hymenobacter aerophilus DSM 13606 [ARNJ]
110798
110725
-
Trp
CCA
[ENA]
¡û
>W1711726862
MTSE01000002
Bacteroidota
Hymenobacter crusticola MIMBbqt21 [MTSE]
155490
155563
+
Trp
CCA
[ENA]
¡û
>W1711767885
MVBC01000009
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
213201
213130
-
Trp
CCA
[ENA]
¡û
>W1712105563
NIRR01000001
Bacteroidota
Hymenobacter amundsenii CCM 8682 [NIRR]
92490
92417
-
Trp
CCA
[ENA]
¡û
>WENV180014700
FQKF010104468
[FQKF] soil metagenome; Soil
85
156
+
Trp
CCA
[ENA]
¢þ
>C191087867
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
3743176
3743247
+
Trp
CCA
-
¡û
>C191154872
CP037922
Bacteroidota
Hymenobacter radiodurans 17J36-26 [CP037922]
652332
652403
+
Trp
CCA
-
¡û
>C191183800
CP040896
Bacteroidota
Hymenobacter jejuensis 17J68-5 [CP040896]
2826698
2826769
+
Trp
CCA
-
¡û
>W1910547390
FZNS01000002
Bacteroidota
Hymenobacter mucosus DSM 28041 [FZNS]
667612
667539
-
Trp
CCA
[ENA]
¡û
>W1911788134
QYCN01000001
Bacteroidota
Hymenobacter rubripertinctus CCM 8852 [QYCN]
139824
139751
-
Trp
CCA
[ENA]
¡û
>W1810089894
PGFA01000002
Bacteroidota
Hymenobacter chitinivorans DSM 11115 [PGFA]
313613
313684
+
Trp
CCA
[ENA]
¡û
>W1810625896
QHKM01000003
Bacteroidota
Hymenobacter edaphi NL [QHKM]
162566
162637
+
Trp
CCA
[ENA]
¡û
>W1810678953
QKNS01000001
Bacteroidota
Hymenobacter sediminis ELS1360 [QKNS]
866685
866758
+
Trp
CCA
[ENA]
¡û
>W1810912365
QVLT01000001
Bacteroidota
Hymenobacter sp. CCM 8763 [QVLT]
109241
109168
-
Trp
CCA
[ENA]
¡û
>C151009415
CP006587
Bacteroidota
Hymenobacter sp. APR13 [CP006587]
2649213
2649284
+
Trp
CCA
[Ensembl]
¡û
>C151017375
CP007145
Bacteroidota
Hymenobacter swuensis DY53 [CP007145]
4068824
4068751
-
Trp
CCA
[Ensembl]
¡û
>C151064002
CP010054
Bacteroidota
Hymenobacter sp. DG25B [CP010054]
3639067
3638994
-
Trp
CCA
[Ensembl]
¡û
>C151096195
CP012623
Bacteroidota
Hymenobacter sp. DG25A [CP012623]
200363
200436
+
Trp
CCA
-
¡û
>W1511543316
JZIR01000059
Bacteroidota
Hymenobacter sp. AT01-02 [JZIR]
44435
44508
+
Trp
CCA
[ENA]
¡û
>W1610749699
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
813321
813392
+
Trp
CCA
[ENA]
¡û
>W1710530555
FNOV01000003
Bacteroidota
Hymenobacter psychrophilus [FNOV]
176425
176352
-
Trp
CCA
[ENA]
¡û
>W1710553563
FOHS01000001
Bacteroidota
Hymenobacter actinosclerus [FOHS]
568557
568630
+
Trp
CCA
[ENA]
¡û
>W1710587459
FQYN01000002
Bacteroidota
Hymenobacter daecheongensis DSM 21074 [FQYN]
583242
583171
-
Trp
CCA
[ENA]
¡û
>W1710590099
FRAS01000002
Bacteroidota
Hymenobacter psychrotolerans DSM 18569 [FRAS]
91866
91939
+
Trp
CCA
[ENA]
¡û
>W1710605420
FWWW01000071
Bacteroidota
Hymenobacter roseosalivarius DSM 11622 [FWWW]
6893
6966
+
Trp
CCA
[ENA]
¡û
>W1710610178
FYEW01000002
Bacteroidota
Hymenobacter gelipurpurascens [FYEW]
667354
667281
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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