This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481423 (50 seq.)
>W1711009513
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
249009
249082
+
Gln
CTG
[ENA]
¡û
>W131163761
ARAA01000021
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
28434
28361
-
Gln
CTG
[ENA]
¡û
>W1711179437
LWHQ01000039
Alphaproteobacteria
Methylobacterium platani [LWHQ]
35879
35806
-
Gln
CTG
[ENA]
¡û
>W1711475554
MJUX01000001
Alphaproteobacteria
Acuticoccus yangtzensis [MJUX]
82038
81965
-
Gln
CTG
[ENA]
¡û
>C171072664
CP018095
Alphaproteobacteria
Chelatococcus daeguensis TAD1 [CP018095]
1633522
1633595
+
Gln
CTG
-
¡û
>w026470
ABAY01000046
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
21910
21835
-
Gln
CTG
[ENA]
¡û
>WENV180327780
OBKT01488635
[OBKT] soil metagenome; soil
166
93
-
Gln
CTG
[ENA]
¢þ
>WENV180692544
OCZS010604119
[OCZS] soil metagenome; soil
112
185
+
Gln
CTG
[ENA]
¢þ
>W08006145
ABIP01000012
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
107289
107219
-
Gln
CTG
[ENA]
¡û
>WENV181164932
OEIR01463668
[OEIR] soil metagenome; soil
218
145
-
Gln
CTG
[ENA]
¢þ
>WENV181166555
OEIU01000613
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
31298
31371
+
Gln
CTG
[ENA]
¢þ
>C08006425
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
4258026
4258099
+
Gln
CTG
[Ensembl]
¡û
>WENV183725934
PJQF01040913
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
152
79
-
Gln
CTG
[ENA]
¢þ
>WENV183750143
PPFU01262758
[PPFU] hypolithon metagenome; Antarctic Hypolithon
362
435
+
Gln
CTG
[ENA]
¢þ
>C181180130
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
5452490
5452417
-
Gln
CTG
-
¡û
>C181180214
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
5440469
5440396
-
Gln
CTG
-
¡û
>W141821065
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1437317
1437390
+
Gln
CTG
[ENA]
¡û
>C09107824
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
2076575
2076648
+
Gln
CTG
[Ensembl]
¡û
>W1911708583
QOWC01000222
Alphaproteobacteria
Methylobacterium crusticola MIMD6 [QOWC]
6366
6293
-
Gln
CTG
[ENA]
¡û
>W1810079884
PELK01001308
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
3478
3551
+
Gln
CTG
[ENA]
¡û
>W1810489508
QBBV01000002
Alphaproteobacteria
Acuticoccus kandeliae J103 [QBBV]
887317
887244
-
Gln
CTG
[ENA]
¡û
>W1810489541
QBBW01000001
Alphaproteobacteria
Acuticoccus yangtzensis JL1095 [QBBW]
85227
85154
-
Gln
CTG
[ENA]
¡û
>W1810624949
QHHQ01000004
Alphaproteobacteria
Acuticoccus sediminis PTG4-2 [QHHQ]
493739
493666
-
Gln
CTG
[ENA]
¡û
>C151094746
CP012398
Alphaproteobacteria
Chelatococcus sp. CO-6 [CP012398]
3207574
3207647
+
Gln
CTG
-
¡û
>W1510741134
CYHC01000007
Alphaproteobacteria
Chelatococcus sambhunathii DSM 18167 [CYHC]
77898
77825
-
Gln
CTG
[ENA]
¡û
>W1511400911
JTHF01000246
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
2509
2582
+
Gln
CTG
[ENA]
¡û
>W1511400962
JTHG01000168
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
11928
11855
-
Gln
CTG
[ENA]
¡û
>W1511507866
JXOD01000037
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
11589
11662
+
Gln
CTG
[ENA]
¡û
>W1511563248
LABX01000130
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
7198
7271
+
Gln
CTG
[ENA]
¡û
>W1511563323
LABY01000173
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
8678
8605
-
Gln
CTG
[ENA]
¡û
>W1511563401
LABZ01000372
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
2339
2412
+
Gln
CTG
[ENA]
¡û
>C161001137
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
1315362
1315435
+
Gln
CTG
[Ensembl]
¡û
>W121103215
AKZI01000052
Alphaproteobacteria
Rhodovulum sp. PH10 [AKZI]
32997
32924
-
Gln
CTG
[ENA]
¡û
>W121110784
ALIQ01000121
Alphaproteobacteria
Chelatococcus sp. GW1 [ALIQ]
10478
10551
+
Gln
CTG
[ENA]
¡û
>W1610047414
BBDG01001117
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
688
615
-
Gln
CTG
[ENA]
¡û
>W1610590463
LDRL01000280
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
2518
2591
+
Gln
CTG
[ENA]
¡û
>W1610590500
LDRM01000094
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
4358
4285
-
Gln
CTG
[ENA]
¡û
>W1610590580
LDRN01000113
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
6737
6810
+
Gln
CTG
[ENA]
¡û
>W1610631768
LIOL01000007
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
77898
77825
-
Gln
CTG
[ENA]
¡û
>W1610858033
LQQT01000004
Alphaproteobacteria
Chelatococcus daeguensis [LQQT]
249009
249082
+
Gln
CTG
[ENA]
¡û
>W1610987338
LWHQ01000039
Alphaproteobacteria
Methylobacterium platani [LWHQ]
35879
35806
-
Gln
CTG
[ENA]
¡û
>W1710015689
AQRB01000001
Alphaproteobacteria
Stappia sp. 22II-S9-Z10 [AQRB]
466600
466673
+
Gln
CTG
[ENA]
¡û
>W1710044019
BBDG01001117
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
688
615
-
Gln
CTG
[ENA]
¡û
>W1710548847
FOEB01000030
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
64804
64877
+
Gln
CTG
[ENA]
¡û
>W1710560677
FONO01000011
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
10264
10337
+
Gln
CTG
[ENA]
¡û
>W1710579034
FPCB01000005
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
32284
32211
-
Gln
CTG
[ENA]
¡û
>W1710709743
LDRL01000280
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
2518
2591
+
Gln
CTG
[ENA]
¡û
>W1710709780
LDRM01000094
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
4358
4285
-
Gln
CTG
[ENA]
¡û
>W1710709860
LDRN01000113
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
6737
6810
+
Gln
CTG
[ENA]
¡û
>W1710764653
LIOL01000007
Alphaproteobacteria
Chelatococcus sambhunathii [LIOL]
77898
77825
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK