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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481454 (70 seq.)
>W1710890936
LNCE01000126
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
175293
175366
+
Cys
GCA
[ENA]
¡û
>W1710924007
LOCQ01000044
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
4206
4133
-
Cys
GCA
[ENA]
¡û
>W1711033388
LRHW01000045
Betaproteobacteria
Janthinobacterium lividum [LRHW]
97
170
+
Cys
GCA
[ENA]
¡û
>W1711033466
LRHX01000010
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
42019
42092
+
Cys
GCA
[ENA]
¡û
>W1711033544
LRHY01000139
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
97
170
+
Cys
GCA
[ENA]
¡û
>W1711033562
LRHZ01000001
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
569196
569269
+
Cys
GCA
[ENA]
¡û
>W1711033654
LRIA01000084
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
113235
113162
-
Cys
GCA
[ENA]
¡û
>W1711033733
LRIB01000052
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
61539
61466
-
Cys
GCA
[ENA]
¡û
>W1711033770
LRIC01000041
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
28241
28168
-
Cys
GCA
[ENA]
¡û
>W1711033813
LRID01000060
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
2954
2881
-
Cys
GCA
[ENA]
¡û
>W131106701
APFF01000027
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
563288
563215
-
Cys
GCA
[ENA]
¡û
>W1711308620
MAQB02000006
Betaproteobacteria
Janthinobacterium lividum [MAQB]
243000
242927
-
Cys
GCA
[ENA]
¡û
>W1712004423
NEGX01000002
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
5428
5501
+
Cys
GCA
[ENA]
¡û
>W1712004528
NEGY01000011
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
115300
115227
-
Cys
GCA
[ENA]
¡û
>W1712004646
NEGZ01000062
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
16667
16594
-
Cys
GCA
[ENA]
¡û
>W1712004721
NEHA01000082
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
15689
15616
-
Cys
GCA
[ENA]
¡û
>W1712004761
NEHB01000008
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
114502
114429
-
Cys
GCA
[ENA]
¡û
>C171010473
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
1786918
1786991
+
Cys
GCA
-
¡û
>C171095014
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
4545398
4545325
-
Cys
GCA
-
¡û
>WENV170557619
CXWL01031772
[CXWL] groundwater metagenome; biofilm material
68013
67940
-
Cys
GCA
[ENA]
¢þ
>WENV170557620
CXWL01031772
[CXWL] groundwater metagenome; biofilm material
31700
31627
-
Cys
GCA
[ENA]
¢þ
>WENV170559532
CXWL01127743
[CXWL] groundwater metagenome; biofilm material
94
167
+
Cys
GCA
[ENA]
¢þ
>W141484479
JFYR01000024
Betaproteobacteria
Janthinobacterium lividum [JFYR]
280
353
+
Cys
GCA
[ENA]
¡û
>C181081151
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4532390
4532317
-
Cys
GCA
-
¡û
>C181102685
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
4217080
4217153
+
Cys
GCA
-
¡û
>C191098163
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
3852919
3852846
-
Cys
GCA
-
¡û
>C191188200
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
2225778
2225705
-
Cys
GCA
-
¡û
>W141821570
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
2074679
2074606
-
Cys
GCA
[ENA]
¡û
>W1910942559
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
317173
317100
-
Cys
GCA
[ENA]
¡û
>W1911199877
NRDQ01000066
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
15929
15856
-
Cys
GCA
[ENA]
¡û
>W1911802832
QYUP01000015
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
16456
16529
+
Cys
GCA
[ENA]
¡û
>W1810062381
PDOB01000026
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
1513
1440
-
Cys
GCA
[ENA]
¡û
>W1810062419
PDOC01000003
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
107040
107113
+
Cys
GCA
[ENA]
¡û
>W1810068205
PDZI01000015
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
149844
149771
-
Cys
GCA
[ENA]
¡û
>W1810068246
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
2595090
2595017
-
Cys
GCA
[ENA]
¡û
>W1810068330
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2613604
2613531
-
Cys
GCA
[ENA]
¡û
>W1810068409
PDZL01000006
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
299562
299635
+
Cys
GCA
[ENA]
¡û
>W1810068467
PDZM01000001
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
401906
401979
+
Cys
GCA
[ENA]
¡û
>W1810068590
PDZN01000022
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
72864
72937
+
Cys
GCA
[ENA]
¡û
>W1810068625
PDZO02000001
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
496576
496503
-
Cys
GCA
[ENA]
¡û
>W1810069729
PEBS01000002
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
70566
70493
-
Cys
GCA
[ENA]
¡û
>W1810071297
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
5132828
5132901
+
Cys
GCA
[ENA]
¡û
>W1810072790
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
4686037
4686110
+
Cys
GCA
[ENA]
¡û
>W1810089437
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
1981337
1981264
-
Cys
GCA
[ENA]
¡û
>W1810121329
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1715176
1715103
-
Cys
GCA
[ENA]
¡û
>W1810172849
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
2463694
2463621
-
Cys
GCA
[ENA]
¡û
>SRA1003778
SRR002327.180594
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
155
82
-
Cys
GCA
[SRA]
>W1810387753
PXWF02000285
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
1924
1851
-
Cys
GCA
[ENA]
¡û
>W1810576809
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
4441356
4441283
-
Cys
GCA
[ENA]
¡û
>C151100147
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
1797014
1797087
+
Cys
GCA
[Ensembl]
¡û
>W1511355683
JRRH01000006
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
107216
107143
-
Cys
GCA
[ENA]
¡û
>W1511588766
LBCO01000024
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
254168
254241
+
Cys
GCA
[ENA]
¡û
>W121031846
AHHB01000037
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
39740
39667
-
Cys
GCA
[ENA]
¡û
>W1610070458
BCTH01000008
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
6846
6773
-
Cys
GCA
[ENA]
¡û
>W1610093133
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3211505
3211578
+
Cys
GCA
[ENA]
¡û
>W1610163427
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
3211505
3211578
+
Cys
GCA
[ENA]
¡û
>W1610751332
LNCE01000126
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
175293
175366
+
Cys
GCA
[ENA]
¡û
>W1610781653
LOCQ01000044
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
4206
4133
-
Cys
GCA
[ENA]
¡û
>W1611056273
MAQB01000062
Betaproteobacteria
Janthinobacterium lividum [MAQB]
77978
77905
-
Cys
GCA
[ENA]
¡û
>W1710067831
BCTH01000008
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
6846
6773
-
Cys
GCA
[ENA]
¡û
>W1710096341
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
3211505
3211578
+
Cys
GCA
[ENA]
¡û
>W1710165094
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
3211505
3211578
+
Cys
GCA
[ENA]
¡û
>W1710509337
FMXD01000001
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
298300
298227
-
Cys
GCA
[ENA]
¡û
>W1710517023
FNDA01000001
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
1401031
1400958
-
Cys
GCA
[ENA]
¡û
>W1710522211
FNHA01000007
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
125
198
+
Cys
GCA
[ENA]
¡û
>W1710556735
FOKL01000001
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
298283
298210
-
Cys
GCA
[ENA]
¡û
>W1710581689
FPKH01000001
Betaproteobacteria
Janthinobacterium lividum [FPKH]
540124
540197
+
Cys
GCA
[ENA]
¡û
>W1710585986
FQWU01000001
Betaproteobacteria
Massilia sp. CF038 [FQWU]
1343529
1343602
+
Cys
GCA
[ENA]
¡û
>W1710596849
FTMV01000003
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
72677
72750
+
Cys
GCA
[ENA]
¡û
>W1710720628
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
488526
488599
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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