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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481750 (25 seq.)
>W131229100
AUGN01000003
Bacteroidota
Flavobacterium gelidilacus DSM 15343 [AUGN]
504579
504506
-
Cys
GCA
[ENA]
¡û
>W1711713313
MTCY01000043
Bacteroidota
Flavobacterium oreochromis columnare [MTCY]
24777
24706
-
Cys
GCA
[ENA]
¡û
>W1711713356
MTCZ01000052
Bacteroidota
Flavobacterium davisii columnare [MTCZ]
12377
12450
+
Cys
GCA
[ENA]
¡û
>W1711713412
MTDA01000017
Bacteroidota
Flavobacterium covae columnare [MTDA]
40722
40649
-
Cys
GCA
[ENA]
¡û
>W1711713463
MTDC01000056
Bacteroidota
Flavobacterium covae columnare [MTDC]
12384
12311
-
Cys
GCA
[ENA]
¡û
>W1711713537
MTDD01000045
Bacteroidota
Flavobacterium oreochromis columnare [MTDD]
3128
3199
+
Cys
GCA
[ENA]
¡û
>W1711738001
MUAW01000002
Bacteroidota
Flavobacterium columnare [MUAW]
563803
563730
-
Cys
GCA
[ENA]
¡û
>C171086242
CP018912
Bacteroidota
Flavobacterium columnare TC 1691 [CP018912]
1546138
1546211
+
Cys
GCA
-
¡û
>WENV181169442
OEIV010002542
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3494
3565
+
Cys
GCA
[ENA]
¢þ
>WENV170229970
CEQG01255644
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
836
907
+
Cys
GCA
[ENA]
¢þ
>C181178728
CP029463
Bacteroidota
Flavobacterium sediminis MEBiC07310 [CP029463]
1525463
1525534
+
Cys
GCA
-
¡û
>C191008613
CP010992
Bacteroidota
Flavobacterium columnare B185 [CP010992]
1987504
1987433
-
Cys
GCA
-
¡û
>W1910804163
MTCX01000042
Bacteroidota
Flavobacterium columnare 1201 [MTCX]
3108
3179
+
Cys
GCA
[ENA]
¡û
>W1910804212
MTDB01000013
Bacteroidota
Flavobacterium columnare 1372 [MTDB]
41129
41058
-
Cys
GCA
[ENA]
¡û
>W1910808984
MUGU01000038
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [MUGU]
12911
12982
+
Cys
GCA
[ENA]
¡û
>W1911533970
OLKH01000052
Bacteroidota
Flavobacterium columnare [OLKH]
18900
18829
-
Cys
GCA
[ENA]
¡û
>W1911564301
PCMX01000005
Bacteroidota
Flavobacterium columnare NBRC 100251 = ATCC 23463 [PCMX]
12806
12877
+
Cys
GCA
[ENA]
¡û
>W1911587284
PJQW01000005
Bacteroidota
Flavobacterium sp. J27 [PJQW]
137535
137464
-
Cys
GCA
[ENA]
¡û
>W1810355187
PVLU01000003
Bacteroidota
Flavobacterium columnare MS-FC-4 [PVLU]
661200
661129
-
Cys
GCA
[ENA]
¡û
>W1810695876
QLSV01000003
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
108332
108403
+
Cys
GCA
[ENA]
¡û
>C121009120
CP003222
Bacteroidota
Flavobacterium columnare ATCC 49512 [CP003222]
2034218
2034145
-
Cys
GCA
[Ensembl]
¡û
>C161063713
CP013992
Bacteroidota
Flavobacterium covae 94-081 [CP013992]
3260795
3260868
+
Cys
GCA
[Ensembl]
¡û
>C161083235
CP015107
Bacteroidota
Flavobacterium covae C#2 [CP015107]
1327877
1327804
-
Cys
GCA
-
¡û
>C161095543
CP016277
Bacteroidota
Flavobacterium columnare Pf1 [CP016277]
4546
4473
-
Cys
GCA
-
¡û
>W1710588400
FQZI01000001
Bacteroidota
Flavobacterium terrae [FQZI]
383710
383637
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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