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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481760 (115 seq.)
>W1710786858
LJJD01000015
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
339265
339338
+
Gly
TCC
[ENA]
¡û
>W1710855635
LLYY01000003
Bacillota
Shouchella shacheensis [LLYY]
242703
242776
+
Gly
TCC
[ENA]
¡û
>W1710855674
LLYY01000039
Bacillota
Shouchella shacheensis [LLYY]
307
234
-
Gly
TCC
[ENA]
¡û
>W131223852
AUCJ01000004
Bacillota
Alteribacter aurantiacus DSM 18675 [AUCJ]
26524
26597
+
Gly
TCC
[ENA]
¡û
>W131223897
AUCJ01000013
Bacillota
Alteribacter aurantiacus DSM 18675 [AUCJ]
1511
1438
-
Gly
TCC
[ENA]
¡û
>W131235130
AULI01000004
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
61127
61200
+
Gly
TCC
[ENA]
¡û
>W131235156
AULI01000013
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
4821
4894
+
Gly
TCC
[ENA]
¡û
>W131235173
AULI01000014
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
170
97
-
Gly
TCC
[ENA]
¡û
>W1711699420
MSLQ01000027
Bacillota
Alkalihalophilus pseudofirmus [MSLQ]
4439
4512
+
Gly
TCC
[ENA]
¡û
>W1711720711
MTIW01000005
Bacillota
Shouchella oshimensis [MTIW]
153640
153713
+
Gly
TCC
[ENA]
¡û
>W1711720804
MTIX01000002
Bacillota
Shouchella patagoniensis [MTIX]
1514799
1514726
-
Gly
TCC
[ENA]
¡û
>W1711720810
MTIX01000002
Bacillota
Shouchella patagoniensis [MTIX]
972687
972614
-
Gly
TCC
[ENA]
¡û
>C002679
AP006627
Bacillota
Shouchella clausii KSM-K16 [AP006627]
933276
933349
+
Gly
TCC
[Ensembl]
¡û
>WENV180193193
OAZW01000198
[OAZW] human gut metagenome; faeces
74065
73992
-
Gly
TCC
[ENA]
¢þ
>WENV180286513
OBII01002290
[OBII] human gut metagenome; feces
2824
2897
+
Gly
TCC
[ENA]
¢þ
>WENV180354124
OBLQ011394962
[OBLQ] soil metagenome; soil
99
172
+
Gly
TCC
[ENA]
¢þ
>W141075228
ATAE01000053
Bacillota
Alkalihalophilus marmarensis DSM 21297 [ATAE]
187
260
+
Gly
TCC
[ENA]
¡û
>WENV180955545
ODUK01000008
[ODUK] human metagenome; G_DNA_Stool
156357
156430
+
Gly
TCC
[ENA]
¢þ
>WENV181466924
OGER01000150
[OGER] metagenome; Human gut stool
3728
3801
+
Gly
TCC
[ENA]
¢þ
>WENV181486160
OGFN01000066
[OGFN] metagenome; Human gut stool
10803
10730
-
Gly
TCC
[ENA]
¢þ
>W141148289
AWXW01000001
Bacillota
Thalassobacillus devorans MSP14 [AWXW]
38942
39013
+
Gly
TCC
[ENA]
¡û
>W141148293
AWXW01000013
Bacillota
Thalassobacillus devorans MSP14 [AWXW]
300102
300031
-
Gly
TCC
[ENA]
¡û
>W141148328
AWXW01000026
Bacillota
Thalassobacillus devorans MSP14 [AWXW]
113680
113753
+
Gly
TCC
[ENA]
¡û
>WENV181515775
OGGW01022618
[OGGW] metagenome; Human gut stool
876
803
-
Gly
TCC
[ENA]
¢þ
>WENV181516094
OGGX01000333
[OGGX] metagenome; Human gut stool
6634
6561
-
Gly
TCC
[ENA]
¢þ
>WENV181518404
OGHA01013681
[OGHA] metagenome; Human gut stool
232
159
-
Gly
TCC
[ENA]
¢þ
>WENV181528192
OGHL01000005
[OGHL] metagenome; Human gut stool
105794
105721
-
Gly
TCC
[ENA]
¢þ
>WENV181538235
OGHY01003052
[OGHY] metagenome; Human gut stool
3657
3730
+
Gly
TCC
[ENA]
¢þ
>WENV181604198
OGLI01012084
[OGLI] metagenome; Human gut stool
1782
1709
-
Gly
TCC
[ENA]
¢þ
>WENV181620122
OGME01003189
[OGME] metagenome; Human gut stool
162
89
-
Gly
TCC
[ENA]
¢þ
>WENV181632899
OGMU01000627
[OGMU] metagenome; Human gut stool
9218
9291
+
Gly
TCC
[ENA]
¢þ
>WENV181642686
OGNG01019601
[OGNG] metagenome; Human gut stool
266
339
+
Gly
TCC
[ENA]
¢þ
>WENV181650455
OGNU01002732
[OGNU] metagenome; Human gut stool
4847
4920
+
Gly
TCC
[ENA]
¢þ
>WENV181653701
OGNY01016789
[OGNY] metagenome; Human gut stool
108
35
-
Gly
TCC
[ENA]
¢þ
>WENV181863990
OGWT01023986
[OGWT] human gut metagenome; faeces
110
37
-
Gly
TCC
[ENA]
¢þ
>WENV181935869
OGYU01035908
[OGYU] human gut metagenome; faeces
789
862
+
Gly
TCC
[ENA]
¢þ
>WENV181959961
OGZN01006935
[OGZN] human gut metagenome; faeces
3692
3765
+
Gly
TCC
[ENA]
¢þ
>WENV181988203
OHAN01005200
[OHAN] human gut metagenome; faeces
4548
4475
-
Gly
TCC
[ENA]
¢þ
>WENV181999741
OHAX01000001
[OHAX] human gut metagenome; faeces
225234
225307
+
Gly
TCC
[ENA]
¢þ
>WENV182046449
OHDV01001823
[OHDV] human gut metagenome; feces
1438
1365
-
Gly
TCC
[ENA]
¢þ
>WENV182062179
OHEU01024568
[OHEU] human gut metagenome; feces
695
768
+
Gly
TCC
[ENA]
¢þ
>WENV182180997
OHNO01047615
[OHNO] human gut metagenome; feces
208
135
-
Gly
TCC
[ENA]
¢þ
>WENV182209601
OHQA01000107
[OHQA] human gut metagenome; feces
37559
37486
-
Gly
TCC
[ENA]
¢þ
>WENV182228354
OHRH01000787
[OHRH] human gut metagenome; feces
2962
2889
-
Gly
TCC
[ENA]
¢þ
>WENV182260775
OHTJ01028393
[OHTJ] human gut metagenome; feces
555
628
+
Gly
TCC
[ENA]
¢þ
>W141233632
BAWA01000004
Bacillota
Bacillus sp. JCM 19045 [BAWA]
209
136
-
Gly
TCC
[ENA]
¡û
>W141233725
BAWB01000090
Bacillota
Bacillus sp. JCM 19046 [BAWB]
934
1007
+
Gly
TCC
[ENA]
¡û
>W141233765
BAWC01000056
Bacillota
Bacillus sp. JCM 19047 [BAWC]
13352
13425
+
Gly
TCC
[ENA]
¡û
>W141234883
BAWZ01000019
Bacillota
Geomicrobium sp. JCM 19037 [BAWZ]
73250
73323
+
Gly
TCC
[ENA]
¡û
>W141234946
BAXA01000016
Bacillota
Geomicrobium sp. JCM 19038 [BAXA]
76360
76433
+
Gly
TCC
[ENA]
¡û
>W141235006
BAXB01000049
Bacillota
Geomicrobium sp. JCM 19039 [BAXB]
369
296
-
Gly
TCC
[ENA]
¡û
>W141235134
BAXL01000007
Bacillota
Geomicrobium sp. JCM 19055 [BAXL]
87973
88046
+
Gly
TCC
[ENA]
¡û
>W141235147
BAXL01000011
Bacillota
Geomicrobium sp. JCM 19055 [BAXL]
144384
144457
+
Gly
TCC
[ENA]
¡û
>W141451543
JFBD01000047
Bacillota
Virgibacillus alimentarius [JFBD]
36644
36714
+
Gly
TCC
[ENA]
¡û
>W141451557
JFBD01000145
Bacillota
Virgibacillus alimentarius [JFBD]
190
117
-
Gly
TCC
[ENA]
¡û
>C181042178
CP019985
Bacillota
Shouchella clausii DSM 8716 [CP019985]
422472
422399
-
Gly
TCC
-
¡û
>W141695149
JMCA01000030
Bacillota
Shouchella clausii [JMCA]
348
275
-
Gly
TCC
[ENA]
¡û
>W1910374431
FUIH01000006
Bacillota
Virgibacillus siamensis Marseille-P2607 [FUIH]
272589
272662
+
Gly
TCC
[ENA]
¡û
>W1910374460
FUIH01000007
Bacillota
Virgibacillus siamensis Marseille-P2607 [FUIH]
1659815
1659744
-
Gly
TCC
[ENA]
¡û
>W1910472064
FXEH01000006
Bacillota
Thalassobacillus devorans Marseille-P394 [FXEH]
10376
10447
+
Gly
TCC
[ENA]
¡û
>W1910472067
FXEH01000006
Bacillota
Thalassobacillus devorans Marseille-P394 [FXEH]
1722111
1722040
-
Gly
TCC
[ENA]
¡û
>W1910505830
FYEQ01000010
Bacillota
Bacillus sp. BO [FYEQ]
725696
725623
-
Gly
TCC
[ENA]
¡û
>W1910545418
FZLP01000001
Bacillota
Bacillus sp. Marseille-P3800 [FZLP]
1277244
1277171
-
Gly
TCC
[ENA]
¡û
>W1910930235
NISN01000003
Bacillota
Bacillus sp. FJAT-45037 [NISN]
1682720
1682650
-
Gly
TCC
[ENA]
¡û
>W1910930508
NISR01000002
Bacillota
Alteribacter populi FJAT-45347 [NISR]
1776088
1776015
-
Gly
TCC
[ENA]
¡û
>W1910930516
NISR01000002
Bacillota
Alteribacter populi FJAT-45347 [NISR]
1374435
1374362
-
Gly
TCC
[ENA]
¡û
>W1910930535
NISR01000003
Bacillota
Alteribacter populi FJAT-45347 [NISR]
225950
226023
+
Gly
TCC
[ENA]
¡û
>W1910930553
NISR01000003
Bacillota
Alteribacter populi FJAT-45347 [NISR]
1033228
1033301
+
Gly
TCC
[ENA]
¡û
>W1910935543
NIXK01000003
Bacillota
Lentibacillus sediminis 0W14 [NIXK]
155809
155882
+
Gly
TCC
[ENA]
¡û
>W1910935548
NIXK01000006
Bacillota
Lentibacillus sediminis 0W14 [NIXK]
90711
90638
-
Gly
TCC
[ENA]
¡û
>W1910935563
NIXK01000010
Bacillota
Lentibacillus sediminis 0W14 [NIXK]
360
287
-
Gly
TCC
[ENA]
¡û
>W1911144693
NPBW01000076
Bacillota
Shouchella clausii 7529 [NPBW]
187
260
+
Gly
TCC
[ENA]
¡û
>W1911144968
NPCB01000129
Bacillota
Shouchella clausii 7538 [NPCB]
8327
8400
+
Gly
TCC
[ENA]
¡û
>W1911145038
NPCC01000068
Bacillota
Shouchella clausii 7539 [NPCC]
186
259
+
Gly
TCC
[ENA]
¡û
>W1911145084
NPCD01000036
Bacillota
Shouchella clausii Jan-40 [NPCD]
258
185
-
Gly
TCC
[ENA]
¡û
>W1911145274
NPCG01000022
Bacillota
Shouchella clausii 7543 [NPCG]
258
185
-
Gly
TCC
[ENA]
¡û
>W1911146505
NPDF01000069
Bacillota
Shouchella clausii Jan-94 [NPDF]
5265
5338
+
Gly
TCC
[ENA]
¡û
>W1810062479
PDOD01000001
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
6722
6795
+
Gly
TCC
[ENA]
¡û
>W1810062494
PDOD01000002
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
1052522
1052449
-
Gly
TCC
[ENA]
¡û
>W1810062501
PDOD01000002
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
767595
767522
-
Gly
TCC
[ENA]
¡û
>W1810062518
PDOD01000005
Bacillota
Salipaludibacillus keqinensis KQ-12 [PDOD]
313001
313074
+
Gly
TCC
[ENA]
¡û
>W1810062548
PDOF01000001
Bacillota
Alteribacter lacisalsi YSP-3 [PDOF]
1097
1170
+
Gly
TCC
[ENA]
¡û
>W1810062597
PDOF01000004
Bacillota
Alteribacter lacisalsi YSP-3 [PDOF]
449
376
-
Gly
TCC
[ENA]
¡û
>W1810103862
PGVA01000003
Bacillota
Bacillus canaveralius M4.6 [PGVA]
138
65
-
Gly
TCC
[ENA]
¡û
>W1810103910
PGVA01000082
Bacillota
Bacillus canaveralius M4.6 [PGVA]
33055
32982
-
Gly
TCC
[ENA]
¡û
>W1810104032
PGVC01000064
Bacillota
Bacillus sp. V33-4 [PGVC]
140
67
-
Gly
TCC
[ENA]
¡û
>W1810104050
PGVC01000068
Bacillota
Bacillus sp. V33-4 [PGVC]
2743
2816
+
Gly
TCC
[ENA]
¡û
>W1810104085
PGVD01000002
Bacillota
Bacillus canaveralius ATCC 29669 [PGVD]
33117
33044
-
Gly
TCC
[ENA]
¡û
>W1810104120
PGVD01000027
Bacillota
Bacillus canaveralius ATCC 29669 [PGVD]
25505
25578
+
Gly
TCC
[ENA]
¡û
>W1810444012
PZJJ01000016
Bacillota
Alkalicoccus saliphilus 6AG [PZJJ]
446
373
-
Gly
TCC
[ENA]
¡û
>W1810444026
PZJJ01000036
Bacillota
Alkalicoccus saliphilus 6AG [PZJJ]
23383
23310
-
Gly
TCC
[ENA]
¡û
>C151005004
CP003923
Bacillota
Shouchella lehensis G1 [CP003923]
2563784
2563711
-
Gly
TCC
[Ensembl]
¡û
>C151095010
CP012475
Bacillota
Shouchella clausii ENTPro [CP012475]
1105679
1105606
-
Gly
TCC
-
¡û
>C10102069
CP001878
Bacillota
Alkalihalophilus pseudofirmus OF4 [CP001878]
1829189
1829262
+
Gly
TCC
[Ensembl]
¡û
>W1510562271
CTEA01000005
Bacillota
Thalassobacillus devorans TM-1 [CTEA]
3059416
3059345
-
Gly
TCC
[ENA]
¡û
>W1610026917
AVPE01000002
Bacillota
Pontibacillus halophilus JSM 076056 = DSM 19796 [AVPE]
127028
127101
+
Gly
TCC
[ENA]
¡û
>W1610026926
AVPE01000013
Bacillota
Pontibacillus halophilus JSM 076056 = DSM 19796 [AVPE]
3143
3216
+
Gly
TCC
[ENA]
¡û
>W1610042257
BAXP01000044
Bacillota
Bacillus sp. JCM 19035 [BAXP]
989
1062
+
Gly
TCC
[ENA]
¡û
>W1610042398
BAXS01000001
Bacillota
Bacillus sp. JCM 19059 [BAXS]
335687
335760
+
Gly
TCC
[ENA]
¡û
>W1610074666
BCXJ01000010
Bacillota
Shouchella clausii [BCXJ]
338
265
-
Gly
TCC
[ENA]
¡û
>W1610576828
LATY01000005
Bacillota
Shouchella clausii [LATY]
276
203
-
Gly
TCC
[ENA]
¡û
>W1610650713
LJJD01000015
Bacillota
Alkalicoccobacillus plakortidis [LJJD]
339265
339338
+
Gly
TCC
[ENA]
¡û
>W1610718016
LLYY01000003
Bacillota
Shouchella shacheensis [LLYY]
242703
242776
+
Gly
TCC
[ENA]
¡û
>W1610718055
LLYY01000039
Bacillota
Shouchella shacheensis [LLYY]
307
234
-
Gly
TCC
[ENA]
¡û
>W1710023082
AVPE01000002
Bacillota
Pontibacillus halophilus JSM 076056 = DSM 19796 [AVPE]
127028
127101
+
Gly
TCC
[ENA]
¡û
>W1710023091
AVPE01000013
Bacillota
Pontibacillus halophilus JSM 076056 = DSM 19796 [AVPE]
3143
3216
+
Gly
TCC
[ENA]
¡û
>W1710039351
BAXP01000044
Bacillota
Bacillus sp. JCM 19035 [BAXP]
989
1062
+
Gly
TCC
[ENA]
¡û
>W1710039492
BAXS01000001
Bacillota
Bacillus sp. JCM 19059 [BAXS]
335687
335760
+
Gly
TCC
[ENA]
¡û
>W1710072481
BCXJ01000010
Bacillota
Shouchella clausii [BCXJ]
338
265
-
Gly
TCC
[ENA]
¡û
>W1710524090
FNIL01000007
Bacillota
Alkalicoccus daliensis [FNIL]
1113
1186
+
Gly
TCC
[ENA]
¡û
>W1710532857
FNQR01000005
Bacillota
Thalassobacillus cyri [FNQR]
148858
148929
+
Gly
TCC
[ENA]
¡û
>W1710532896
FNQR01000020
Bacillota
Thalassobacillus cyri [FNQR]
42959
43030
+
Gly
TCC
[ENA]
¡û
>W1710532907
FNQR01000024
Bacillota
Thalassobacillus cyri [FNQR]
61439
61512
+
Gly
TCC
[ENA]
¡û
>W1710591457
FRBS01000007
Bacillota
Shouchella rhizosphaerae [FRBS]
242255
242328
+
Gly
TCC
[ENA]
¡û
>W1710695317
LATY01000005
Bacillota
Shouchella clausii [LATY]
276
203
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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