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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.481898 (22 seq.)
>A171001436
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
562598
562670
+
Ala
TGC
-
¡û
>A171001440
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
697161
697233
+
Ala
TGC
-
¡û
>A171001458
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
1905608
1905536
-
Ala
TGC
-
¡û
>A171002992
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
229086
229158
+
Ala
TGC
-
¡û
>A171003010
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
2364356
2364284
-
Ala
TGC
-
¡û
>A171004621
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
1302423
1302495
+
Ala
TGC
-
¡û
>A171004673
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
1202685
1202757
+
Ala
TGC
-
¡û
>A171005293
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
54477
54549
+
Ala
TGC
-
¡û
>A171006792
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
811821
811893
+
Ala
TGC
-
¡û
>WENV170007318
AMWB02106094
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
6505
6433
-
Ala
TGC
[ENA]
¢þ
>W1910228314
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
409308
409236
-
Ala
TGC
[ENA]
¡û
>W1910228332
FNMU01000004
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
260314
260242
-
Ala
TGC
[ENA]
¡û
>W1910228338
FNMU01000005
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
185983
186055
+
Ala
TGC
[ENA]
¡û
>W1910228346
FNMU01000008
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
63826
63898
+
Ala
TGC
[ENA]
¡û
>W1910471804
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
329797
329725
-
Ala
TGC
[ENA]
¡û
>W1910471806
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
271662
271590
-
Ala
TGC
[ENA]
¡û
>W1910582996
JWTK01000010
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
3452
3380
-
Ala
TGC
[ENA]
¡û
>W1910635260
LMVP01000500
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
133
61
-
Ala
TGC
[ENA]
¡û
>W1911492151
OBDR01000020
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
3453
3381
-
Ala
TGC
[ENA]
¡û
>W1911633785
PVBU01000022
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
3605
3533
-
Ala
TGC
[ENA]
¡û
>W1911653225
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
466901
466829
-
Ala
TGC
[ENA]
¡û
>W1611052488
MAFX01000005
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
38140
38212
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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