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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482104 (44 seq.)
>W131108923
APGP01000027
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
58362
58435
+
Gln
CTG
[ENA]
¡û
>W131218292
ATXO01000003
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
9815
9742
-
Gln
CTG
[ENA]
¡û
>C006912
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2390246
2390173
-
Gln
CTG
[Ensembl]
¡û
>WENV180014100
FPIC01055975
[FPIC] soil metagenome; Soil
7111
7184
+
Gln
CTG
[ENA]
¢þ
>WENV181226110
OFDK01000053
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9056
8983
-
Gln
CTG
[ENA]
¢þ
>WENV181285344
OFGS01000012
[OFGS] hot springs metagenome; Water and soil
9490
9417
-
Gln
CTG
[ENA]
¢þ
>WENV181408542
OGCH01005010
[OGCH] hot springs metagenome; hot springs
27
100
+
Gln
CTG
[ENA]
¢þ
>C191131098
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1019429
1019502
+
Gln
CTG
-
¡û
>W09113822
ABYZ01000006
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
121140
121213
+
Gln
CTG
[ENA]
¡û
>C09100847
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1805735
1805662
-
Gln
CTG
[Ensembl]
¡û
>W1911155352
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1973497
1973424
-
Gln
CTG
[ENA]
¡û
>W1911244031
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2495881
2495954
+
Gln
CTG
[ENA]
¡û
>W1911244092
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1510652
1510579
-
Gln
CTG
[ENA]
¡û
>W1911244133
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2063618
2063545
-
Gln
CTG
[ENA]
¡û
>W1911244169
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1056143
1056216
+
Gln
CTG
[ENA]
¡û
>W1911244237
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1974572
1974499
-
Gln
CTG
[ENA]
¡û
>W1911572532
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
976050
976123
+
Gln
CTG
[ENA]
¡û
>W1911572586
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2767767
2767694
-
Gln
CTG
[ENA]
¡û
>W1911572627
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1071383
1071456
+
Gln
CTG
[ENA]
¡û
>W1810052237
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
525430
525503
+
Gln
CTG
[ENA]
¡û
>W1810071885
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1011793
1011866
+
Gln
CTG
[ENA]
¡û
>W1810071934
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2044262
2044335
+
Gln
CTG
[ENA]
¡û
>W1810071988
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2696046
2695973
-
Gln
CTG
[ENA]
¡û
>W1810368013
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2559089
2559016
-
Gln
CTG
[ENA]
¡û
>C10103632
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
988800
988873
+
Gln
CTG
[Ensembl]
¡û
>C11105202
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1052707
1052780
+
Gln
CTG
[Ensembl]
¡û
>C11105394
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1799462
1799389
-
Gln
CTG
[Ensembl]
¡û
>C11105427
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1160073
1160146
+
Gln
CTG
[Ensembl]
¡û
>C11105488
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1202449
1202376
-
Gln
CTG
[Ensembl]
¡û
>C11105869
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1540687
1540614
-
Gln
CTG
[Ensembl]
¡û
>W11139388
AEKB01000007
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
108555
108628
+
Gln
CTG
[ENA]
¡û
>W11139409
AEKC01000007
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
75919
75992
+
Gln
CTG
[ENA]
¡û
>W11139474
AEKD01000026
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
29588
29661
+
Gln
CTG
[ENA]
¡û
>W1511563962
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1977588
1977515
-
Gln
CTG
[ENA]
¡û
>W1511563999
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
561298
561225
-
Gln
CTG
[ENA]
¡û
>W1511564044
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1141285
1141358
+
Gln
CTG
[ENA]
¡û
>W1710603735
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1497996
1498069
+
Gln
CTG
[ENA]
¡û
>W1710603833
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
959285
959212
-
Gln
CTG
[ENA]
¡û
>W1710603920
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1907737
1907664
-
Gln
CTG
[ENA]
¡û
>W1710605083
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
971241
971168
-
Gln
CTG
[ENA]
¡û
>W1710609657
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1416639
1416712
+
Gln
CTG
[ENA]
¡û
>W1710609695
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
814555
814628
+
Gln
CTG
[ENA]
¡û
>W1710609764
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2077673
2077600
-
Gln
CTG
[ENA]
¡û
>W1710609810
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2070216
2070143
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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