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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.482205 (19 seq.)
>W1711081235
LSSA01000149
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
3443
3515
+
Arg
CCG
[ENA]
¡û
>W131058309
ANFJ01000002
Cyanobacteriota
Fortiea contorta PCC 7126 [ANFJ]
2788548
2788620
+
Arg
CCG
[ENA]
¡û
>C015303
BA000019
Cyanobacteriota
Nostoc sp. PCC 7120 = FACHB-418 [BA000019]
2845593
2845521
-
Arg
CCG
[Ensembl]
¡û
>WENV171003098
NNBT01000873
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
170
242
+
Arg
CCG
[ENA]
¢þ
>WENV171003391
NNBT01009005
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
153
81
-
Arg
CCG
[ENA]
¢þ
>WENV171003434
NNBU01000020
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
35066
34992
-
Arg
CCG
[ENA]
¢þ
>WENV171003471
NNBU01000067
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
15651
15723
+
Arg
CCG
[ENA]
¢þ
>WENV171003680
NNBV01000091
[NNBV] plant metagenome; symbiotic tissue sample KVS11
9637
9709
+
Arg
CCG
[ENA]
¢þ
>C181137712
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
3025273
3025345
+
Arg
CCG
-
¡û
>C181137806
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
4314303
4314375
+
Arg
CCG
-
¡û
>C191083012
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
138668
138740
+
Arg
CCG
-
¡û
>W1910020542
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
805725
805653
-
Arg
CCG
[ENA]
¡û
>W1910646649
LWSY01000078
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
19880
19808
-
Arg
CCG
[ENA]
¡û
>W1911118657
NOLI01000041
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
15301
15373
+
Arg
CCG
[ENA]
¡û
>W1911118763
NOLJ01000012
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
94180
94252
+
Arg
CCG
[ENA]
¡û
>W1911118773
NOLK01000004
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
100838
100766
-
Arg
CCG
[ENA]
¡û
>C161002525
AP017295
Cyanobacteriota
Nostoc sp. NIES-3756 [AP017295]
4801533
4801461
-
Arg
CCG
[Ensembl]
¡û
>C131010315
CP003943
Cyanobacteriota
Calothrix sp. PCC 7507 [CP003943]
6154045
6153973
-
Arg
CCG
[Ensembl]
¡û
>W1710087987
BDUB01000001
Cyanobacteriota
Nodularia sp. NIES-3585 [BDUB]
3577263
3577191
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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